-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1972

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 107, 120
Couldn't classify 995, 1132
Sorry, prediction GeneMark_model.109911_t fails validation.
(GAC)	 AG	107-120	GT	ATG
(GCT)	 AG	210-323	GT	GGG
(CGA)	 AG	348-536	GT	TGG
(GAG)	 AG	630-674	GT	GGG
(AGG)	 AG	698-778	GT	AGG
(AGG)	 AG	809-871	GT	GGG
(GAG)	 AG	897-971	GT	GGG
(AGG)	 AG	995-1132	GT	TCG
-recovered GeneMark_model.109911_t, internal, 107, 120
-recovered GeneMark_model.109911_t, internal, 210, 323
-recovered GeneMark_model.109911_t, internal, 348, 536
-recovered GeneMark_model.109911_t, internal, 630, 674
-recovered GeneMark_model.109911_t, internal, 698, 778
-recovered GeneMark_model.109911_t, internal, 809, 871
-recovered GeneMark_model.109911_t, internal, 897, 971
-recovered GeneMark_model.109911_t, internal, 995, 1132
Valid prediction for snap_scaffold_1972-snap.1-T1
add_exon() Sorry, snap_scaffold_1972-snap.1-T1 242-540-terminal-1 is invalid.
Valid prediction for snap_scaffold_1972-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62917-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1711
-exon list size: 23


building trellis

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32.0    
36.0    
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44.0    
48.0    
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96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support