-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1971

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 236, 441
Sorry, prediction GlimmerHMM_glimmerT_62916-T1 fails validation.
(GCC)	 AG	236-441	GT	CGG
(GTG)	 AG	866-1018	GT	AGG
(AAC)	 AG	1147-1242	TT	GAT
-recovered GlimmerHMM_glimmerT_62916-T1, terminal, 1147, 1242
-recovered GlimmerHMM_glimmerT_62916-T1, internal, 236, 441
-recovered GlimmerHMM_glimmerT_62916-T1, internal, 866, 1018
Couldn't classify 236, 441
Couldn't classify 1320, 1412
Sorry, prediction Augustus_model.g41896.t1 fails validation.
(GCC)	 AG	236-441	GT	CGG
(GTG)	 AG	866-1018	GT	AGG
(AAC)	 AG	1147-1236	GT	AGG
(GTG)	 AG	1320-1412	GT	AGG
-recovered Augustus_model.g41896.t1, internal, 236, 441
-recovered Augustus_model.g41896.t1, internal, 866, 1018
-recovered Augustus_model.g41896.t1, internal, 1147, 1236
-recovered Augustus_model.g41896.t1, internal, 1320, 1412
Couldn't classify 236, 705
Couldn't classify 1320, 1412
Sorry, prediction GeneMark_model.109910_t fails validation.
(GCC)	 AG	236-705	GT	CAG
(GTG)	 AG	866-1066	GT	CGG
(AAC)	 AG	1147-1236	GT	AGG
(GTG)	 AG	1320-1412	GT	AGG
-recovered GeneMark_model.109910_t, internal, 236, 705
-recovered GeneMark_model.109910_t, internal, 866, 1066
-recovered GeneMark_model.109910_t, internal, 1147, 1236
-recovered GeneMark_model.109910_t, internal, 1320, 1412
Couldn't classify 236, 441
Couldn't classify 1320, 1412
Sorry, prediction snap_scaffold_1971-snap.1-T1 fails validation.
(GCC)	 AG	236-441	GT	CGG
(GTG)	 AG	866-1066	GT	CGG
(AAC)	 AG	1147-1236	GT	AGG
(GTG)	 AG	1320-1412	GT	AGG
-recovered snap_scaffold_1971-snap.1-T1, internal, 236, 441
-recovered snap_scaffold_1971-snap.1-T1, internal, 866, 1066
-recovered snap_scaffold_1971-snap.1-T1, internal, 1147, 1236
-recovered snap_scaffold_1971-snap.1-T1, internal, 1320, 1412

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1712
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support