-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1970

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 225, 305
Couldn't classify 1535, 1701
Sorry, prediction snap_scaffold_1970-snap.2-T1 fails validation.
(TTC)	 AG	225-305	GT	GTG
(CCC)	 AG	1199-1266	GT	AGG
(GTG)	 AG	1535-1701	GT	AGG
-recovered snap_scaffold_1970-snap.2-T1, internal, 225, 305
-recovered snap_scaffold_1970-snap.2-T1, internal, 1199, 1266
-recovered snap_scaffold_1970-snap.2-T1, internal, 1535, 1701

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 67, 223
Couldn't classify 1591, 1672
Sorry, prediction GeneMark_model.109909_t fails validation.
(ACT)	 AG	67-223	GT	AGG
(GGG)	 AG	471-655	GT	AGG
(GGA)	 AG	698-712	GT	GGG
(GGG)	 AG	735-761	GT	GGG
(GGT)	 AG	1369-1509	GT	AAG
(GTT)	 AG	1591-1672	GT	AGG
-recovered GeneMark_model.109909_t, internal, 67, 223
-recovered GeneMark_model.109909_t, internal, 471, 655
-recovered GeneMark_model.109909_t, internal, 698, 712
-recovered GeneMark_model.109909_t, internal, 735, 761
-recovered GeneMark_model.109909_t, internal, 1369, 1509
-recovered GeneMark_model.109909_t, internal, 1591, 1672
Couldn't classify 92, 223
Sorry, prediction GlimmerHMM_glimmerT_62915-T1 fails validation.
(GTT)	 AG	92-223	GT	AGG
(GGG)	 AG	471-655	GT	AGG
(GGT)	 AG	1369-1513	GT	GAG
-recovered GlimmerHMM_glimmerT_62915-T1, terminal, 1369, 1513
-recovered GlimmerHMM_glimmerT_62915-T1, internal, 92, 223
-recovered GlimmerHMM_glimmerT_62915-T1, internal, 471, 655
-recovered GlimmerHMM_glimmerT_62915-T1, internal, 1369, 1513
Couldn't classify 59, 223
Couldn't classify 471, 653
Sorry, prediction pasa_asmbl_22797.p1 fails validation.
(CCT)	 CC	59-223	GT	AGG
(GGG)	 AG	471-653	AG	ACA
Couldn't classify 67, 223
Couldn't classify 1369, 1509
Sorry, prediction snap_scaffold_1970-snap.1-T1 fails validation.
(ACT)	 AG	67-223	GT	AGG
(GGG)	 AG	471-655	GT	AGG
(GGT)	 AG	1369-1509	GT	AAG
-recovered snap_scaffold_1970-snap.1-T1, internal, 67, 223
-recovered snap_scaffold_1970-snap.1-T1, internal, 471, 655
-recovered snap_scaffold_1970-snap.1-T1, internal, 1369, 1509
Couldn't classify 1591, 1672
Sorry, prediction Augustus_model.g41895.t1 fails validation.
(ATG)	 TG	104-223	GT	AGG
(GGG)	 AG	471-655	GT	AGG
(GGT)	 AG	1369-1509	GT	AAG
(GTT)	 AG	1591-1672	GT	AGG
-recovered Augustus_model.g41895.t1, initial, 104, 223
-recovered Augustus_model.g41895.t1, internal, 471, 655
-recovered Augustus_model.g41895.t1, internal, 1369, 1509
-recovered Augustus_model.g41895.t1, internal, 1591, 1672

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1646, rend_intergenic: 225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1712
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1646, rend_intergenic: 225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support