-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_197

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106904_t
Valid prediction for GeneMark_model.106906_t
Couldn't classify 9337, 9491
Sorry, prediction snap_scaffold_197-snap.2-T1 fails validation.
(ATG)	 CC	1312-1332	GT	TGG
(AAC)	 AG	2871-2992	GT	CGG
(GTG)	 AG	5646-5792	GT	AGG
(AGA)	 AG	5882-5999	GT	AGG
(GGT)	 AG	7487-8208	GT	AGG
(GTT)	 AG	8373-8440	GT	ACG
(AGC)	 AG	9337-9491	GT	AGG
-recovered snap_scaffold_197-snap.2-T1, initial, 1312, 1332
-recovered snap_scaffold_197-snap.2-T1, internal, 2871, 2992
-recovered snap_scaffold_197-snap.2-T1, internal, 5646, 5792
-recovered snap_scaffold_197-snap.2-T1, internal, 5882, 5999
-recovered snap_scaffold_197-snap.2-T1, internal, 7487, 8208
-recovered snap_scaffold_197-snap.2-T1, internal, 8373, 8440
-recovered snap_scaffold_197-snap.2-T1, internal, 9337, 9491

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 436, 484
Sorry, prediction GeneMark_model.106907_t fails validation.
(TCC)	 AG	436-484	GT	GAG
(TGG)	 AG	563-637	GT	CAG
(GTC)	 AG	758-796	GT	GGG
(GCA)	 AG	831-878	GT	CGG
(GGG)	 AG	901-921	GT	GGG
(GGG)	 AG	953-958	GT	GGG
(AAG)	 AG	982-990	GT	GGG
(GTG)	 AG	1309-1371	GT	AGG
(AAA)	 AG	1395-1424	GT	GTG
(ATG)	 AG	1447-1450	TC	GAT
-recovered GeneMark_model.106907_t, terminal, 1447, 1450
-recovered GeneMark_model.106907_t, internal, 436, 484
-recovered GeneMark_model.106907_t, internal, 563, 637
-recovered GeneMark_model.106907_t, internal, 758, 796
-recovered GeneMark_model.106907_t, internal, 831, 878
-recovered GeneMark_model.106907_t, internal, 901, 921
-recovered GeneMark_model.106907_t, internal, 953, 958
-recovered GeneMark_model.106907_t, internal, 982, 990
-recovered GeneMark_model.106907_t, internal, 1309, 1371
-recovered GeneMark_model.106907_t, internal, 1395, 1424
Couldn't classify 436, 484
Sorry, prediction GlimmerHMM_glimmerT_61491-T1 fails validation.
(TCC)	 AG	436-484	GT	GAG
(GCT)	 AG	1498-1621	GT	CTG
(ATC)	 AG	2250-2430	GT	AGG
(GTC)	 AG	3936-4028	GT	TGG
(CCT)	 AG	4211-4383	CC	AGC
-recovered GlimmerHMM_glimmerT_61491-T1, terminal, 4211, 4383
-recovered GlimmerHMM_glimmerT_61491-T1, internal, 436, 484
-recovered GlimmerHMM_glimmerT_61491-T1, internal, 1498, 1621
-recovered GlimmerHMM_glimmerT_61491-T1, internal, 2250, 2430
-recovered GlimmerHMM_glimmerT_61491-T1, internal, 3936, 4028
Valid prediction for GeneMark_model.106903_t
Valid prediction for GeneMark_model.106905_t
Valid prediction for Augustus_model.g40896.t1
Couldn't classify 436, 573
Couldn't classify 9374, 9421
Sorry, prediction snap_scaffold_197-snap.1-T1 fails validation.
(TCC)	 AG	436-573	GT	TGG
(GCT)	 AG	1498-1621	GT	CTG
(ATC)	 AG	2250-2430	GT	AGG
(GTC)	 AG	3936-4028	GT	TGG
(ATG)	 AG	7425-7463	GT	TGG
(AGC)	 AG	9374-9421	GT	CGG
-recovered snap_scaffold_197-snap.1-T1, initial, 7425, 7463
-recovered snap_scaffold_197-snap.1-T1, internal, 436, 573
-recovered snap_scaffold_197-snap.1-T1, internal, 1498, 1621
-recovered snap_scaffold_197-snap.1-T1, internal, 2250, 2430
-recovered snap_scaffold_197-snap.1-T1, internal, 3936, 4028
-recovered snap_scaffold_197-snap.1-T1, internal, 7425, 7463
-recovered snap_scaffold_197-snap.1-T1, internal, 9374, 9421

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9471, rend_intergenic: 1312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9906
-exon list size: 69


building trellis

1.4    
2.8    
4.2    
5.6    
7.0    
8.5    
9.9    
11.3    
12.7    
14.1    
15.5    
16.9    
18.3    
19.7    
21.1    
22.5    
23.9    
25.4    
26.8    
28.2    
29.6    
31.0    
32.4    
33.8    
35.2    
36.6    
38.0    
39.4    
40.8    
42.3    
43.7    
45.1    
46.5    
47.9    
49.3    
50.7    
52.1    
53.5    
54.9    
56.3    
57.7    
59.2    
60.6    
62.0    
63.4    
64.8    
66.2    
67.6    
69.0    
70.4    
71.8    
73.2    
74.6    
76.1    
77.5    
78.9    
80.3    
81.7    
83.1    
84.5    
85.9    
87.3    
88.7    
90.1    
91.5    
93.0    
94.4    
95.8    
97.2    
98.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 9471, rend_intergenic: 1312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support