-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1968

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 396, 570
Couldn't classify 1094, 1195
Sorry, prediction snap_scaffold_1968-snap.1-T1 fails validation.
(CAG)	 AG	396-570	GT	TGG
(GCT)	 AG	1094-1195	GT	GGG
-recovered snap_scaffold_1968-snap.1-T1, internal, 396, 570
-recovered snap_scaffold_1968-snap.1-T1, internal, 1094, 1195
Couldn't classify 399, 570
Couldn't classify 1623, 1714
Sorry, prediction Augustus_model.g41894.t1 fails validation.
(CCA)	 AG	399-570	GT	TGG
(GCT)	 AG	1094-1195	GT	GGG
(GCT)	 AG	1623-1714		AC
-recovered Augustus_model.g41894.t1, internal, 399, 570
-recovered Augustus_model.g41894.t1, internal, 1094, 1195
Couldn't classify 403, 570
Couldn't classify 1623, 1696
Sorry, prediction GeneMark_model.109908_t fails validation.
(TCT)	 AG	403-570	GT	TGG
(GCT)	 AG	1094-1195	GT	GGG
(GCT)	 AG	1623-1696	GC	CTG
-recovered GeneMark_model.109908_t, internal, 403, 570
-recovered GeneMark_model.109908_t, internal, 1094, 1195
-recovered GeneMark_model.109908_t, internal, 1623, 1696
Couldn't classify 396, 545
Sorry, prediction GlimmerHMM_glimmerT_62913-T1 fails validation.
(CAG)	 AG	396-545	GT	ATG
(GCT)	 AG	1094-1100	TG	AGT
-recovered GlimmerHMM_glimmerT_62913-T1, terminal, 1094, 1100
-recovered GlimmerHMM_glimmerT_62913-T1, internal, 396, 545

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1714
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support