-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1967

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1967-snap.1-T1
add_exon() Sorry, snap_scaffold_1967-snap.1-T1 188-420-terminal-1 is invalid.
Valid prediction for Augustus_model.g41893.t1
add_exon() Sorry, Augustus_model.g41893.t1 188-420-terminal-1 is invalid.
Couldn't classify 1168, 1186
Sorry, prediction GeneMark_model.109907_t fails validation.
(ATG)	 AA	835-845	GT	GCG
(GAG)	 AG	880-921	GT	GAG
(CAG)	 AG	947-1003	GT	GAG
(GGA)	 AG	1036-1092	GT	AGG
(AGT)	 AG	1114-1146	GT	AGG
(GGA)	 AG	1168-1186	GT	GGG
-recovered GeneMark_model.109907_t, initial, 835, 845
-recovered GeneMark_model.109907_t, internal, 880, 921
-recovered GeneMark_model.109907_t, internal, 947, 1003
-recovered GeneMark_model.109907_t, internal, 1036, 1092
-recovered GeneMark_model.109907_t, internal, 1114, 1146
-recovered GeneMark_model.109907_t, internal, 1168, 1186

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62912-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1714
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support