-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1965

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62910-T1
Couldn't classify 45, 96
Couldn't classify 1057, 1254
Sorry, prediction GeneMark_model.109906_t fails validation.
(GCC)	 AG	45-96	GT	CAG
(ACA)	 AG	155-331	GT	GTG
(AGC)	 AG	966-1018	GT	GGG
(CCC)	 AG	1057-1254	GT	CAG
-recovered GeneMark_model.109906_t, internal, 45, 96
-recovered GeneMark_model.109906_t, internal, 155, 331
-recovered GeneMark_model.109906_t, internal, 966, 1018
-recovered GeneMark_model.109906_t, internal, 1057, 1254
Valid prediction for Augustus_model.g41892.t1
Couldn't classify 155, 317
Sorry, prediction snap_scaffold_1965-snap.1-T1 fails validation.
(ACA)	 AG	155-317	GT	AGG
(GGA)	 AG	1065-1316	AC	AAA
-recovered snap_scaffold_1965-snap.1-T1, terminal, 1065, 1316
-recovered snap_scaffold_1965-snap.1-T1, internal, 155, 317

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1717
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support