-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1964

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1640, 1696
Sorry, prediction GeneMark_model.109905_t fails validation.
(ATG)	 GG	762-841	GT	AGG
(AGC)	 AG	877-903	GT	AAG
(AGA)	 AG	926-1004	GT	AGG
(TGT)	 AG	1033-1058	GT	GAG
(AGC)	 AG	1084-1110	GT	GGG
(CCA)	 AG	1338-1409	GT	GGG
(GGC)	 AG	1640-1696	GC	AGG
-recovered GeneMark_model.109905_t, initial, 762, 841
-recovered GeneMark_model.109905_t, internal, 877, 903
-recovered GeneMark_model.109905_t, internal, 926, 1004
-recovered GeneMark_model.109905_t, internal, 1033, 1058
-recovered GeneMark_model.109905_t, internal, 1084, 1110
-recovered GeneMark_model.109905_t, internal, 1338, 1409
-recovered GeneMark_model.109905_t, internal, 1640, 1696

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 967, 1284
Sorry, prediction snap_scaffold_1964-snap.1-T1 fails validation.
(CAG)	 AG	967-1284	GT	AAG
-recovered snap_scaffold_1964-snap.1-T1, internal, 967, 1284
Valid prediction for Augustus_model.g41891.t1
Couldn't classify 1155, 1284
Sorry, prediction GeneMark_model.109904_t fails validation.
(ATG)	 GG	1080-1117	GT	GAG
(GAC)	 AG	1155-1284	GT	AAG
-recovered GeneMark_model.109904_t, initial, 1080, 1117
-recovered GeneMark_model.109904_t, internal, 1155, 1284

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1719
-exon list size: 18


building trellis

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10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support