-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1962

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109902_t
Couldn't classify 1062, 1082
Sorry, prediction GeneMark_model.109903_t fails validation.
(AGA)	 AG	1062-1082	GT	GAG
(AGA)	 AG	1108-1119	GT	GAG
(AAA)	 AG	1142-1162	GC	GGG
(AGA)	 AG	1185-1376	GT	GAG
(AGA)	 AG	1404-1418	GT	GAG
(ACA)	 AG	1444-1458	GT	GAG
(AGT)	 AG	1486-1510	TA	GAT
-recovered GeneMark_model.109903_t, terminal, 1486, 1510
-recovered GeneMark_model.109903_t, internal, 1062, 1082
-recovered GeneMark_model.109903_t, internal, 1108, 1119
-recovered GeneMark_model.109903_t, internal, 1142, 1162
-recovered GeneMark_model.109903_t, internal, 1185, 1376
-recovered GeneMark_model.109903_t, internal, 1404, 1418
-recovered GeneMark_model.109903_t, internal, 1444, 1458

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1720
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support