-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_196

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9237, 9373
Sorry, prediction GeneMark_model.106902_t fails validation.
(ATG)	 AG	7632-7794	GT	CGG
(GAG)	 AG	8409-8558	GT	AGG
(GGA)	 AG	9237-9373	GT	AGG
-recovered GeneMark_model.106902_t, initial, 7632, 7794
-recovered GeneMark_model.106902_t, internal, 7632, 7794
-recovered GeneMark_model.106902_t, internal, 8409, 8558
-recovered GeneMark_model.106902_t, internal, 9237, 9373
Valid prediction for snap_scaffold_196-snap.1-T1
Couldn't classify 9649, 9790
Sorry, prediction GlimmerHMM_glimmerT_61490-T1 fails validation.
(ATG)	 AG	7632-7794	GT	CGG
(GAG)	 AG	8409-8558	GT	AGG
(AGT)	 AG	8767-8930	GT	TGG
(TTG)	 AG	9197-9373	GT	AGG
(AAT)	 AG	9649-9790	GT	AGG
-recovered GlimmerHMM_glimmerT_61490-T1, initial, 7632, 7794
-recovered GlimmerHMM_glimmerT_61490-T1, internal, 7632, 7794
-recovered GlimmerHMM_glimmerT_61490-T1, internal, 8409, 8558
-recovered GlimmerHMM_glimmerT_61490-T1, internal, 8767, 8930
-recovered GlimmerHMM_glimmerT_61490-T1, internal, 9197, 9373
-recovered GlimmerHMM_glimmerT_61490-T1, internal, 9649, 9790
Valid prediction for GeneMark_model.106900_t
Couldn't classify 9649, 9790
Sorry, prediction snap_scaffold_196-snap.2-T1 fails validation.
(ATG)	 GT	7457-7498	GT	ATG
(ATG)	 AG	7632-7794	GT	CGG
(GAG)	 AG	8409-8558	GT	AGG
(AGT)	 AG	8767-8930	GT	TGG
(TTG)	 AG	9197-9373	GT	AGG
(AAT)	 AG	9649-9790	GT	AGG
-recovered snap_scaffold_196-snap.2-T1, initial, 7457, 7498
-recovered snap_scaffold_196-snap.2-T1, initial, 7632, 7794
-recovered snap_scaffold_196-snap.2-T1, internal, 7632, 7794
-recovered snap_scaffold_196-snap.2-T1, internal, 8409, 8558
-recovered snap_scaffold_196-snap.2-T1, internal, 8767, 8930
-recovered snap_scaffold_196-snap.2-T1, internal, 9197, 9373
-recovered snap_scaffold_196-snap.2-T1, internal, 9649, 9790
Couldn't classify 9649, 9790
Sorry, prediction Augustus_model.g40895.t1 fails validation.
(ATG)	 AG	7632-7794	GT	CGG
(GAG)	 AG	8409-8558	GT	AGG
(AGT)	 AG	8767-8930	GT	TGG
(TTG)	 AG	9197-9373	GT	AGG
(AAT)	 AG	9649-9790	GT	AGG
-recovered Augustus_model.g40895.t1, initial, 7632, 7794
-recovered Augustus_model.g40895.t1, internal, 7632, 7794
-recovered Augustus_model.g40895.t1, internal, 8409, 8558
-recovered Augustus_model.g40895.t1, internal, 8767, 8930
-recovered Augustus_model.g40895.t1, internal, 9197, 9373
-recovered Augustus_model.g40895.t1, internal, 9649, 9790
Valid prediction for GlimmerHMM_glimmerT_61489-T1
Valid prediction for Augustus_model.g40894.t1
Valid prediction for GlimmerHMM_glimmerT_61488-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106901_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9924
-exon list size: 38


building trellis

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-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support