-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1958

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 355, 680
Couldn't classify 1428, 1587
Sorry, prediction GeneMark_model.109899_t fails validation.
(GTA)	 AG	355-680	GT	GAG
(TAA)	 AG	710-780	GT	CTG
(CTC)	 AG	1034-1142	GT	AGG
(GAT)	 AG	1428-1587	GT	AGG
add_exon() Sorry, GeneMark_model.109899_t 355-680-terminal-2 is invalid.
-recovered GeneMark_model.109899_t, terminal, 355, 680
-recovered GeneMark_model.109899_t, internal, 355, 680
-recovered GeneMark_model.109899_t, internal, 710, 780
-recovered GeneMark_model.109899_t, internal, 1034, 1142
-recovered GeneMark_model.109899_t, internal, 1428, 1587
Couldn't classify 1428, 1587
Sorry, prediction GlimmerHMM_glimmerT_62908-T1 fails validation.
(ATG)	 TG	433-676	GT	CTG
(CTC)	 AG	1034-1142	GT	AGG
(GAT)	 AG	1428-1587	GT	AGG
-recovered GlimmerHMM_glimmerT_62908-T1, initial, 433, 676
-recovered GlimmerHMM_glimmerT_62908-T1, internal, 1034, 1142
-recovered GlimmerHMM_glimmerT_62908-T1, internal, 1428, 1587
Couldn't classify 355, 676
Couldn't classify 1428, 1587
Sorry, prediction Augustus_model.g41889.t1 fails validation.
(GTA)	 AG	355-676	GT	CTG
(CTC)	 AG	1034-1142	GT	AGG
(GAT)	 AG	1428-1587	GT	AGG
-recovered Augustus_model.g41889.t1, internal, 355, 676
-recovered Augustus_model.g41889.t1, internal, 1034, 1142
-recovered Augustus_model.g41889.t1, internal, 1428, 1587
Couldn't classify 361, 676
Couldn't classify 1428, 1587
Sorry, prediction pasa_asmbl_22793.p1 fails validation.
(GGA)	 AA	361-676	GT	CTG
(CTC)	 AG	1034-1142	GT	AGG
(GAT)	 AG	1428-1587	GT	AGG
-recovered pasa_asmbl_22793.p1, internal, 1034, 1142
-recovered pasa_asmbl_22793.p1, internal, 1428, 1587
Couldn't classify 355, 676
Couldn't classify 1428, 1587
Sorry, prediction snap_scaffold_1958-snap.1-T1 fails validation.
(GTA)	 AG	355-676	GT	CTG
(CTC)	 AG	1034-1142	GT	AGG
(GAT)	 AG	1428-1587	GT	AGG
-recovered snap_scaffold_1958-snap.1-T1, internal, 355, 676
-recovered snap_scaffold_1958-snap.1-T1, internal, 1034, 1142
-recovered snap_scaffold_1958-snap.1-T1, internal, 1428, 1587

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1235, 1321
Sorry, prediction snap_scaffold_1958-snap.2-T1 fails validation.
(ATG)	 AC	173-332	GT	AGG
(GTG)	 AG	1050-1186	GT	AGG
(GTG)	 AG	1235-1321	GT	TGG
-recovered snap_scaffold_1958-snap.2-T1, initial, 173, 332
-recovered snap_scaffold_1958-snap.2-T1, internal, 1050, 1186
-recovered snap_scaffold_1958-snap.2-T1, internal, 1235, 1321

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1587, rend_intergenic: 403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1723
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1587, rend_intergenic: 403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support