-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1957

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 653, 666
Couldn't classify 1386, 1425
Sorry, prediction GeneMark_model.109898_t fails validation.
(GAG)	 AG	653-666	GT	GTG
(CAT)	 AG	725-803	GT	AGG
(GAG)	 AG	1210-1299	GT	AGG
(CCC)	 AG	1386-1425	GT	TGG
-recovered GeneMark_model.109898_t, internal, 653, 666
-recovered GeneMark_model.109898_t, internal, 725, 803
-recovered GeneMark_model.109898_t, internal, 1210, 1299
-recovered GeneMark_model.109898_t, internal, 1386, 1425
Couldn't classify 653, 803
Couldn't classify 1210, 1299
Sorry, prediction Augustus_model.g41888.t1 fails validation.
(GAG)	 AG	653-803	GT	AGG
(GAG)	 AG	1210-1299	GT	AGG
-recovered Augustus_model.g41888.t1, internal, 653, 803
-recovered Augustus_model.g41888.t1, internal, 1210, 1299
Couldn't classify 653, 803
Sorry, prediction GlimmerHMM_glimmerT_62907-T1 fails validation.
(GAG)	 AG	653-803	GT	AGG
(GAG)	 AG	1210-1413	TG	AGT
-recovered GlimmerHMM_glimmerT_62907-T1, terminal, 1210, 1413
-recovered GlimmerHMM_glimmerT_62907-T1, internal, 653, 803

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1723
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support