-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1955

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1126, 1188
Couldn't classify 1414, 1457
Sorry, prediction GeneMark_model.109896_t fails validation.
(GGA)	 AG	1126-1188	GT	GAG
(GGA)	 AG	1216-1254	GC	GAG
(TGA)	 AG	1278-1286	GT	GAG
(CAA)	 AG	1316-1336	GT	GAG
(CAA)	 AG	1366-1386	GT	GAG
(AAG)	 AG	1414-1457	GT	AGG
-recovered GeneMark_model.109896_t, internal, 1126, 1188
-recovered GeneMark_model.109896_t, internal, 1216, 1254
-recovered GeneMark_model.109896_t, internal, 1278, 1286
-recovered GeneMark_model.109896_t, internal, 1316, 1336
-recovered GeneMark_model.109896_t, internal, 1366, 1386
-recovered GeneMark_model.109896_t, internal, 1414, 1457

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1727
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support