-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1950

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 290, 397
Couldn't classify 1560, 1667
Sorry, prediction snap_scaffold_1950-snap.1-T1 fails validation.
(GTG)	 AG	290-397	GT	AAG
(GCC)	 AG	682-846	GT	GTG
(GAT)	 AG	1560-1667	GT	AGG
-recovered snap_scaffold_1950-snap.1-T1, internal, 290, 397
-recovered snap_scaffold_1950-snap.1-T1, internal, 682, 846
-recovered snap_scaffold_1950-snap.1-T1, internal, 1560, 1667
Couldn't classify 290, 397
Couldn't classify 1560, 1667
Sorry, prediction Augustus_model.g41887.t1 fails validation.
(GTG)	 AG	290-397	GT	AAG
(GCC)	 AG	682-846	GT	GTG
(GAT)	 AG	1560-1667	GT	AGG
-recovered Augustus_model.g41887.t1, internal, 290, 397
-recovered Augustus_model.g41887.t1, internal, 682, 846
-recovered Augustus_model.g41887.t1, internal, 1560, 1667
Couldn't classify 262, 289
Couldn't classify 1560, 1643
Sorry, prediction GeneMark_model.109894_t fails validation.
(GTG)	 AG	262-289	GT	AGG
(CAT)	 AG	343-397	GT	AAG
(GCC)	 AG	682-846	GT	GTG
(GAT)	 AG	1560-1643	GT	GAG
-recovered GeneMark_model.109894_t, internal, 262, 289
-recovered GeneMark_model.109894_t, internal, 343, 397
-recovered GeneMark_model.109894_t, internal, 682, 846
-recovered GeneMark_model.109894_t, internal, 1560, 1643
Couldn't classify 288, 397
Couldn't classify 1560, 1665
Sorry, prediction pasa_asmbl_22789.p1 fails validation.
(AGG)	 CC	288-397	GT	AAG
(CAG)	 AG	679-846	GT	GTG
(GAT)	 AG	1560-1665	AG	ACA
-recovered pasa_asmbl_22789.p1, internal, 679, 846
Valid prediction for GlimmerHMM_glimmerT_62905-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1744
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support