-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_195

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40893.t1
Valid prediction for snap_scaffold_195-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40892.t1
Couldn't classify 9807, 9855
Sorry, prediction GeneMark_model.106898_t fails validation.
(ATG)	 GC	3537-3541	GT	CAG
(AGA)	 AG	3828-4586	GT	GAG
(ACA)	 AG	4612-5388	GT	CAG
(AGA)	 AG	5490-5948	GT	GAG
(AGA)	 AG	5990-6211	GC	AGG
(AGA)	 AG	6236-7540	GC	ATG
(ACA)	 AG	7567-9534	GC	GAG
(AGA)	 AG	9560-9718	GT	CAG
(ACA)	 AG	9750-9779	GT	GAG
(AGA)	 AG	9807-9855	GT	GGG
-recovered GeneMark_model.106898_t, initial, 3537, 3541
-recovered GeneMark_model.106898_t, internal, 3828, 4586
-recovered GeneMark_model.106898_t, internal, 4612, 5388
-recovered GeneMark_model.106898_t, internal, 5490, 5948
-recovered GeneMark_model.106898_t, internal, 5990, 6211
-recovered GeneMark_model.106898_t, internal, 6236, 7540
-recovered GeneMark_model.106898_t, internal, 7567, 9534
-recovered GeneMark_model.106898_t, internal, 9560, 9718
-recovered GeneMark_model.106898_t, internal, 9750, 9779
-recovered GeneMark_model.106898_t, internal, 9807, 9855
Valid prediction for snap_scaffold_195-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61487-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9926
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support