-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1949

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 472, 477
Sorry, prediction GeneMark_model.109892_t fails validation.
(TCT)	 AG	472-477	GT	CTG
(AGA)	 AG	603-635	GT	GAG
(AGA)	 AG	659-853	GT	CAG
(ACA)	 AG	877-1006	AG	AAA
-recovered GeneMark_model.109892_t, terminal, 877, 1006
-recovered GeneMark_model.109892_t, internal, 472, 477
-recovered GeneMark_model.109892_t, internal, 603, 635
-recovered GeneMark_model.109892_t, internal, 659, 853

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 87
Sorry, prediction GeneMark_model.109893_t fails validation.
(AGG)	 AG	33-87	GT	TGG
(AAC)	 AG	194-240	GT	AGG
(ACA)	 AG	294-551	GT	CAG
(GGG)	 AG	706-715	CT	AGC
-recovered GeneMark_model.109893_t, terminal, 706, 715
-recovered GeneMark_model.109893_t, internal, 33, 87
-recovered GeneMark_model.109893_t, internal, 194, 240
-recovered GeneMark_model.109893_t, internal, 294, 551

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1745
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support