-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1948

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 245, 292
Sorry, prediction GeneMark_model.109891_t fails validation.
(AGG)	 AG	245-292	GT	GAG
(GGA)	 AG	727-735	GT	GAG
(GTG)	 AG	758-880	GT	ATG
(AAG)	 AG	915-950	GT	AGG
(AGG)	 AG	971-1124	CT	AGC
-recovered GeneMark_model.109891_t, terminal, 971, 1124
-recovered GeneMark_model.109891_t, internal, 245, 292
-recovered GeneMark_model.109891_t, internal, 727, 735
-recovered GeneMark_model.109891_t, internal, 758, 880
-recovered GeneMark_model.109891_t, internal, 915, 950
Couldn't classify 699, 1058
Sorry, prediction snap_scaffold_1948-snap.1-T1 fails validation.
(GGG)	 AG	699-1058	GT	CAG
-recovered snap_scaffold_1948-snap.1-T1, internal, 699, 1058

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1748
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support