-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1947

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 162, 173
Sorry, prediction GeneMark_model.109890_t fails validation.
(GAA)	 AG	162-173	GT	GAG
(GAA)	 AG	199-310	GT	AAG
(CTG)	 AG	383-464	GT	ATG
(GTC)	 AG	536-647	GT	AAG
(AAG)	 AG	1320-1347	AA	AAA
-recovered GeneMark_model.109890_t, terminal, 1320, 1347
-recovered GeneMark_model.109890_t, internal, 162, 173
-recovered GeneMark_model.109890_t, internal, 199, 310
-recovered GeneMark_model.109890_t, internal, 383, 464
-recovered GeneMark_model.109890_t, internal, 536, 647
Valid prediction for GlimmerHMM_glimmerT_62904-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1611, 1676
Sorry, prediction snap_scaffold_1947-snap.1-T1 fails validation.
(ATG)	 CA	290-320	GT	AGG
(CAC)	 AG	1188-1326	GT	GGG
(TTG)	 AG	1611-1676	GT	TGG
-recovered snap_scaffold_1947-snap.1-T1, initial, 290, 320
-recovered snap_scaffold_1947-snap.1-T1, internal, 1188, 1326
-recovered snap_scaffold_1947-snap.1-T1, internal, 1611, 1676

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1749
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support