-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1946

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 14, 71
Couldn't classify 1592, 1738
Sorry, prediction GeneMark_model.109889_t fails validation.
(ACC)	 AG	14-71	GT	AGG
(GGC)	 AG	961-1255	GT	AGG
(GTG)	 AG	1592-1738	GT	TCG
-recovered GeneMark_model.109889_t, internal, 14, 71
-recovered GeneMark_model.109889_t, internal, 961, 1255
-recovered GeneMark_model.109889_t, internal, 1592, 1738
Couldn't classify 1592, 1654
Sorry, prediction snap_scaffold_1946-snap.1-T1 fails validation.
(ATG)	 AA	898-929	GT	TTG
(GGC)	 AG	961-1255	GT	AGG
(GTG)	 AG	1592-1654	GT	AAG
-recovered snap_scaffold_1946-snap.1-T1, initial, 898, 929
-recovered snap_scaffold_1946-snap.1-T1, internal, 961, 1255
-recovered snap_scaffold_1946-snap.1-T1, internal, 1592, 1654
Valid prediction for GlimmerHMM_glimmerT_62903-T1
Couldn't classify 1592, 1750
Sorry, prediction Augustus_model.g41886.t1 fails validation.
(ATG)	 AG	526-548	GT	GTG
(GGC)	 AG	961-1255	GT	AGG
(GTG)	 AG	1592-1750		CC
-recovered Augustus_model.g41886.t1, initial, 526, 548
-recovered Augustus_model.g41886.t1, internal, 526, 548
-recovered Augustus_model.g41886.t1, internal, 961, 1255

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1750
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support