-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1941

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 44, 128
Couldn't classify 1686, 1725
Sorry, prediction GeneMark_model.109883_t fails validation.
(CGT)	 AG	44-128	GT	AGG
(CTG)	 AG	270-387	GT	GAG
(ACC)	 AG	713-798	GT	AGG
(ATT)	 AG	1287-1454	GT	AGG
(GTG)	 AG	1686-1725	GT	TCG
-recovered GeneMark_model.109883_t, internal, 44, 128
-recovered GeneMark_model.109883_t, internal, 270, 387
-recovered GeneMark_model.109883_t, internal, 713, 798
-recovered GeneMark_model.109883_t, internal, 1287, 1454
-recovered GeneMark_model.109883_t, internal, 1686, 1725
Couldn't classify 1686, 1753
Sorry, prediction Augustus_model.g41884.t1 fails validation.
(ATG)	 CC	120-128	GT	AGG
(CTG)	 AG	270-387	GT	GAG
(ACC)	 AG	713-798	GT	AGG
(ATT)	 AG	1287-1454	GT	AGG
(GTG)	 AG	1686-1753		CC
-recovered Augustus_model.g41884.t1, initial, 120, 128
-recovered Augustus_model.g41884.t1, internal, 270, 387
-recovered Augustus_model.g41884.t1, internal, 713, 798
-recovered Augustus_model.g41884.t1, internal, 1287, 1454
Valid prediction for GlimmerHMM_glimmerT_62901-T1
Couldn't classify 44, 128
Couldn't classify 1287, 1454
Sorry, prediction snap_scaffold_1941-snap.1-T1 fails validation.
(CGT)	 AG	44-128	GT	AGG
(CTG)	 AG	270-387	GT	GAG
(ACC)	 AG	713-798	GT	AGG
(ATT)	 AG	1287-1454	GT	AGG
-recovered snap_scaffold_1941-snap.1-T1, internal, 44, 128
-recovered snap_scaffold_1941-snap.1-T1, internal, 270, 387
-recovered snap_scaffold_1941-snap.1-T1, internal, 713, 798
-recovered snap_scaffold_1941-snap.1-T1, internal, 1287, 1454
Couldn't classify 81, 128
Couldn't classify 1287, 1412
Sorry, prediction pasa_asmbl_22787.p1 fails validation.
(AAC)	 GA	81-128	GT	AGG
(CTG)	 AG	270-387	GT	GAG
(ACC)	 AG	713-798	GT	AGG
(ATT)	 AG	1287-1412	AC	GCA
-recovered pasa_asmbl_22787.p1, internal, 270, 387
-recovered pasa_asmbl_22787.p1, internal, 713, 798

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1753
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support