-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1940

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1461, 1552
Sorry, prediction snap_scaffold_1940-snap.1-T1 fails validation.
(ATG)	 TG	42-116	GT	GGG
(CTC)	 AG	918-979	GT	ATG
(AAT)	 AG	1461-1552	GT	ATG
-recovered snap_scaffold_1940-snap.1-T1, initial, 42, 116
-recovered snap_scaffold_1940-snap.1-T1, internal, 918, 979
-recovered snap_scaffold_1940-snap.1-T1, internal, 1461, 1552

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62900-T1
Valid prediction for Augustus_model.g41883.t1
Couldn't classify 526, 534
Couldn't classify 1536, 1669
Sorry, prediction GeneMark_model.109882_t fails validation.
(GGG)	 AG	526-534	GT	TTG
(GGG)	 AG	659-676	GT	CAG
(GAG)	 AG	743-814	GT	GGG
(AAT)	 AG	925-1000	GT	AGG
(GAG)	 AG	1536-1669	GT	CAG
-recovered GeneMark_model.109882_t, internal, 526, 534
-recovered GeneMark_model.109882_t, internal, 659, 676
-recovered GeneMark_model.109882_t, internal, 743, 814
-recovered GeneMark_model.109882_t, internal, 925, 1000
-recovered GeneMark_model.109882_t, internal, 1536, 1669

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1755
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support