-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1939

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1697, 1702
Sorry, prediction GeneMark_model.109881_t fails validation.
(ATG)	 GG	1115-1149	GT	GAG
(AAG)	 AG	1170-1205	GT	GAG
(AAG)	 AG	1232-1237	GT	GAG
(AGA)	 AG	1254-1262	GT	GAG
(AAG)	 AG	1285-1290	GT	GAG
(AAG)	 AG	1317-1322	GT	GAG
(AAG)	 AG	1351-1356	GT	GAG
(TGA)	 AG	1390-1446	GT	AAG
(AGT)	 AG	1472-1504	GT	GAG
(AAG)	 AG	1525-1530	GT	GAG
(TGA)	 AG	1560-1586	GT	GAG
(AAG)	 AG	1609-1614	GT	GAG
(AAG)	 AG	1639-1674	GT	GAG
(AAG)	 AG	1697-1702	GT	GAG
-recovered GeneMark_model.109881_t, initial, 1115, 1149
add_exon() Sorry, GeneMark_model.109881_t 1390-1446-terminal-1 is invalid.
-recovered GeneMark_model.109881_t, terminal, 1390, 1446
add_exon() Sorry, GeneMark_model.109881_t 1639-1674-terminal-1 is invalid.
-recovered GeneMark_model.109881_t, terminal, 1639, 1674
-recovered GeneMark_model.109881_t, internal, 1170, 1205
-recovered GeneMark_model.109881_t, internal, 1232, 1237
-recovered GeneMark_model.109881_t, internal, 1254, 1262
-recovered GeneMark_model.109881_t, internal, 1285, 1290
-recovered GeneMark_model.109881_t, internal, 1317, 1322
-recovered GeneMark_model.109881_t, internal, 1351, 1356
-recovered GeneMark_model.109881_t, internal, 1390, 1446
-recovered GeneMark_model.109881_t, internal, 1472, 1504
-recovered GeneMark_model.109881_t, internal, 1525, 1530
-recovered GeneMark_model.109881_t, internal, 1560, 1586
-recovered GeneMark_model.109881_t, internal, 1609, 1614
-recovered GeneMark_model.109881_t, internal, 1639, 1674
-recovered GeneMark_model.109881_t, internal, 1697, 1702

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1464, 1740
Sorry, prediction snap_scaffold_1939-snap.1-T1 fails validation.
(AAG)	 AG	1464-1740	GT	AGG
-recovered snap_scaffold_1939-snap.1-T1, internal, 1464, 1740

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1756
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support