-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1937

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 316, 487
Couldn't classify 1498, 1724
Sorry, prediction pasa_asmbl_22785.p1 fails validation.
(AGT)	 GC	316-487	GT	GGG
(GTG)	 AG	928-1104	GT	AGG
(CCG)	 AG	1498-1724	GT	GTG
-recovered pasa_asmbl_22785.p1, internal, 928, 1104
-recovered pasa_asmbl_22785.p1, internal, 1498, 1724
Couldn't classify 1498, 1722
Sorry, prediction snap_scaffold_1937-snap.1-T1 fails validation.
(ATG)	 GG	94-101	GT	AGG
(TGT)	 AG	318-487	GT	GGG
(GTG)	 AG	928-1104	GT	AGG
(CCG)	 AG	1498-1722	GT	AGG
-recovered snap_scaffold_1937-snap.1-T1, initial, 94, 101
-recovered snap_scaffold_1937-snap.1-T1, internal, 318, 487
-recovered snap_scaffold_1937-snap.1-T1, internal, 928, 1104
-recovered snap_scaffold_1937-snap.1-T1, internal, 1498, 1722
Couldn't classify 318, 487
Couldn't classify 1498, 1722
Sorry, prediction Augustus_model.g41882.t1 fails validation.
(TGT)	 AG	318-487	GT	GGG
(GTG)	 AG	928-1104	GT	AGG
(CCG)	 AG	1498-1722	GT	AGG
-recovered Augustus_model.g41882.t1, internal, 318, 487
-recovered Augustus_model.g41882.t1, internal, 928, 1104
-recovered Augustus_model.g41882.t1, internal, 1498, 1722
Couldn't classify 1498, 1722
Sorry, prediction GlimmerHMM_glimmerT_62899-T1 fails validation.
(ATG)	 AG	340-487	GT	GGG
(GTG)	 AG	928-1104	GT	AGG
(CCG)	 AG	1498-1722	GT	AGG
-recovered GlimmerHMM_glimmerT_62899-T1, initial, 340, 487
-recovered GlimmerHMM_glimmerT_62899-T1, internal, 340, 487
-recovered GlimmerHMM_glimmerT_62899-T1, internal, 928, 1104
-recovered GlimmerHMM_glimmerT_62899-T1, internal, 1498, 1722
Couldn't classify 44, 55
Sorry, prediction GeneMark_model.109879_t fails validation.
(GGA)	 AG	44-55	GT	AGG
(GGA)	 AG	78-101	GT	AGG
(GGA)	 AG	125-142	GC	AGG
(TGT)	 AG	318-487	GT	GGG
(GTG)	 AG	928-1106	GT	GTG
(TCA)	 AG	1228-1251	TG	GAT
-recovered GeneMark_model.109879_t, terminal, 1228, 1251
-recovered GeneMark_model.109879_t, internal, 44, 55
-recovered GeneMark_model.109879_t, internal, 78, 101
-recovered GeneMark_model.109879_t, internal, 125, 142
-recovered GeneMark_model.109879_t, internal, 318, 487
-recovered GeneMark_model.109879_t, internal, 928, 1106

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109880_t
Couldn't classify 1235, 1330
Sorry, prediction snap_scaffold_1937-snap.2-T1 fails validation.
(ATG)	 CG	186-470	GT	AAG
(AAG)	 AG	1235-1330	GT	CGG
-recovered snap_scaffold_1937-snap.2-T1, initial, 186, 470
-recovered snap_scaffold_1937-snap.2-T1, internal, 1235, 1330

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1722, rend_intergenic: 429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1758
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1722, rend_intergenic: 429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support