-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1935

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1582, 1751
Sorry, prediction GeneMark_model.109877_t fails validation.
(CTG)	 AG	1582-1751	GC	AGG
-recovered GeneMark_model.109877_t, internal, 1582, 1751
Couldn't classify 1573, 1760
Sorry, prediction Augustus_model.g41881.t1 fails validation.
(ATG)	 GA	1308-1323	GT	AGG
(TGT)	 AG	1573-1760		GG
-recovered Augustus_model.g41881.t1, initial, 1308, 1323

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1760
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support