-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1934

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62898-T1
Couldn't classify 597, 720
Couldn't classify 1544, 1572
Sorry, prediction Augustus_model.g41880.t1 fails validation.
(GTT)	 AG	597-720	GT	CTG
(GAA)	 AG	1098-1126	GT	AGG
(ATT)	 AG	1357-1439	GT	GAG
(GAG)	 AG	1544-1572	GT	TGG
-recovered Augustus_model.g41880.t1, internal, 597, 720
-recovered Augustus_model.g41880.t1, internal, 1098, 1126
-recovered Augustus_model.g41880.t1, internal, 1357, 1439
-recovered Augustus_model.g41880.t1, internal, 1544, 1572

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1760
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support