-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1933

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 33, 288
Couldn't classify 1568, 1738
Sorry, prediction GeneMark_model.109876_t fails validation.
(CTG)	 AG	33-288	GT	AAG
(GGT)	 AG	730-865	GT	CAG
(GGA)	 AG	901-1082	GT	GGG
(GGG)	 AG	1520-1547	GT	ATG
(GGA)	 AG	1568-1738	GC	GAG
-recovered GeneMark_model.109876_t, internal, 33, 288
-recovered GeneMark_model.109876_t, internal, 730, 865
-recovered GeneMark_model.109876_t, internal, 901, 1082
-recovered GeneMark_model.109876_t, internal, 1520, 1547
-recovered GeneMark_model.109876_t, internal, 1568, 1738
Couldn't classify 23, 288
Couldn't classify 867, 1082
Sorry, prediction snap_scaffold_1933-snap.1-T1 fails validation.
(CTG)	 AG	23-288	GT	AAG
(GGT)	 AG	730-846	GT	CAG
(TCT)	 AG	867-1082	GT	GGG
-recovered snap_scaffold_1933-snap.1-T1, internal, 23, 288
-recovered snap_scaffold_1933-snap.1-T1, internal, 730, 846
-recovered snap_scaffold_1933-snap.1-T1, internal, 867, 1082

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 212, 308
Sorry, prediction GlimmerHMM_glimmerT_62897-T1 fails validation.
(ACA)	 AG	212-308	GT	CTG
(TTG)	 AG	884-1124	GT	AGG
(GTG)	 AG	1497-1615	GG	GAG
-recovered GlimmerHMM_glimmerT_62897-T1, terminal, 1497, 1615
-recovered GlimmerHMM_glimmerT_62897-T1, internal, 212, 308
-recovered GlimmerHMM_glimmerT_62897-T1, internal, 884, 1124
Couldn't classify 212, 308
Sorry, prediction Augustus_model.g41879.t1 fails validation.
(ACA)	 AG	212-308	GT	CTG
(TTG)	 AG	884-1124	GT	AGG
(GTG)	 AG	1497-1615	GG	GAG
-recovered Augustus_model.g41879.t1, terminal, 1497, 1615
-recovered Augustus_model.g41879.t1, internal, 212, 308
-recovered Augustus_model.g41879.t1, internal, 884, 1124
Couldn't classify 159, 308
Sorry, prediction pasa_asmbl_22784.p1 fails validation.
(CCC)	 CT	159-308	GT	CTG
(TTG)	 AG	884-1124	GT	AGG
(GTG)	 AG	1497-1615	GG	GAG
-recovered pasa_asmbl_22784.p1, terminal, 1497, 1615
-recovered pasa_asmbl_22784.p1, internal, 884, 1124
Couldn't classify 212, 308
Sorry, prediction snap_scaffold_1933-snap.2-T1 fails validation.
(ACA)	 AG	212-308	GT	CTG
(TTG)	 AG	884-1124	GT	AGG
(GTG)	 AG	1497-1615	GG	GAG
-recovered snap_scaffold_1933-snap.2-T1, terminal, 1497, 1615
-recovered snap_scaffold_1933-snap.2-T1, internal, 212, 308
-recovered snap_scaffold_1933-snap.2-T1, internal, 884, 1124

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1082, rend_intergenic: 146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1760
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1082, rend_intergenic: 146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support