-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1931

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109873_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1459, 1549
Sorry, prediction snap_scaffold_1931-snap.1-T1 fails validation.
(ATG)	 CT	9-90	GT	TGG
(AGT)	 AG	272-396	GT	CTG
(AGT)	 AG	507-692	GT	AGG
(GCT)	 AG	1459-1549	GT	GGG
-recovered snap_scaffold_1931-snap.1-T1, initial, 9, 90
-recovered snap_scaffold_1931-snap.1-T1, internal, 272, 396
-recovered snap_scaffold_1931-snap.1-T1, internal, 507, 692
-recovered snap_scaffold_1931-snap.1-T1, internal, 1459, 1549
Couldn't classify 17, 90
Sorry, prediction GeneMark_model.109874_t fails validation.
(TGA)	 AG	17-90	GT	TGG
(AGT)	 AG	272-396	GT	CTG
(AGT)	 AG	507-782	AA	AAA
-recovered GeneMark_model.109874_t, terminal, 507, 782
-recovered GeneMark_model.109874_t, internal, 17, 90
-recovered GeneMark_model.109874_t, internal, 272, 396
Couldn't classify 272, 396
Sorry, prediction GlimmerHMM_glimmerT_62895-T1 fails validation.
(AGT)	 AG	272-396	GT	CTG
(GGC)	 AG	452-472	TG	GAT
-recovered GlimmerHMM_glimmerT_62895-T1, terminal, 452, 472
-recovered GlimmerHMM_glimmerT_62895-T1, internal, 272, 396
Couldn't classify 1, 90
Couldn't classify 507, 692
Sorry, prediction Augustus_model.g41877.t1 fails validation.
(GAA)	 GG	1-90	GT	TGG
(AGT)	 AG	272-396	GT	CTG
(AGT)	 AG	507-692	GT	AGG
-recovered Augustus_model.g41877.t1, internal, 272, 396
-recovered Augustus_model.g41877.t1, internal, 507, 692

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1761
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support