-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1926

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 874, 888
Couldn't classify 1273, 1282
Sorry, prediction GeneMark_model.109869_t fails validation.
(AGA)	 AG	874-888	GT	GAG
(AGA)	 AG	914-922	GT	GAG
(TGT)	 AG	956-970	GT	AGG
(TAG)	 AG	1055-1069	GT	GAG
(GAG)	 AG	1092-1148	GT	GGG
(GCA)	 AG	1171-1191	GT	AGG
(AGG)	 AG	1221-1250	GT	GAG
(ACA)	 AG	1273-1282	GT	AGG
-recovered GeneMark_model.109869_t, internal, 874, 888
-recovered GeneMark_model.109869_t, internal, 914, 922
-recovered GeneMark_model.109869_t, internal, 956, 970
-recovered GeneMark_model.109869_t, internal, 1055, 1069
-recovered GeneMark_model.109869_t, internal, 1092, 1148
-recovered GeneMark_model.109869_t, internal, 1171, 1191
-recovered GeneMark_model.109869_t, internal, 1221, 1250
-recovered GeneMark_model.109869_t, internal, 1273, 1282

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1765
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support