-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1924

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 424, 429
Couldn't classify 1632, 1755
Sorry, prediction GeneMark_model.109867_t fails validation.
(GAG)	 AG	424-429	GT	GCG
(AAG)	 AG	457-471	GT	CAG
(GAC)	 AG	1213-1242	GT	GAG
(TGG)	 AG	1266-1280	GT	GAG
(GGC)	 AG	1314-1451	GC	GAG
(AGC)	 AG	1477-1518	GT	GAG
(GCT)	 AG	1632-1755	GC	GCG
-recovered GeneMark_model.109867_t, internal, 424, 429
-recovered GeneMark_model.109867_t, internal, 457, 471
-recovered GeneMark_model.109867_t, internal, 1213, 1242
-recovered GeneMark_model.109867_t, internal, 1266, 1280
-recovered GeneMark_model.109867_t, internal, 1314, 1451
-recovered GeneMark_model.109867_t, internal, 1477, 1518
-recovered GeneMark_model.109867_t, internal, 1632, 1755
Couldn't classify 1372, 1691
Sorry, prediction snap_scaffold_1924-snap.1-T1 fails validation.
(ATG)	 AG	13-186	GT	AGG
(TGG)	 AG	1372-1691	GT	AGG
-recovered snap_scaffold_1924-snap.1-T1, initial, 13, 186
-recovered snap_scaffold_1924-snap.1-T1, internal, 13, 186
-recovered snap_scaffold_1924-snap.1-T1, internal, 1372, 1691

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1768
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support