-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1922

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 540, 683
Couldn't classify 1480, 1582
Sorry, prediction GeneMark_model.109866_t fails validation.
(GTG)	 AG	540-683	GT	TAG
(GTG)	 AG	1200-1232	GT	AGG
(GCA)	 AG	1276-1302	GT	AGG
(GTG)	 AG	1340-1372	GT	AGG
(GTG)	 AG	1410-1442	GT	AGG
(GTG)	 AG	1480-1582	GT	AGG
-recovered GeneMark_model.109866_t, internal, 540, 683
-recovered GeneMark_model.109866_t, internal, 1200, 1232
-recovered GeneMark_model.109866_t, internal, 1276, 1302
-recovered GeneMark_model.109866_t, internal, 1340, 1372
-recovered GeneMark_model.109866_t, internal, 1410, 1442
-recovered GeneMark_model.109866_t, internal, 1480, 1582
Couldn't classify 540, 688
Couldn't classify 1480, 1582
Sorry, prediction snap_scaffold_1922-snap.1-T1 fails validation.
(GTG)	 AG	540-688	GT	AGG
(GTG)	 AG	1373-1442	GT	AGG
(GTG)	 AG	1480-1582	GT	AGG
-recovered snap_scaffold_1922-snap.1-T1, internal, 540, 688
-recovered snap_scaffold_1922-snap.1-T1, internal, 1373, 1442
-recovered snap_scaffold_1922-snap.1-T1, internal, 1480, 1582
Couldn't classify 1033, 1133
Sorry, prediction GlimmerHMM_glimmerT_62894-T1 fails validation.
(ATG)	 GA	519-688	GT	AGG
(GAT)	 AG	1033-1133	GT	CAG
-recovered GlimmerHMM_glimmerT_62894-T1, initial, 519, 688
-recovered GlimmerHMM_glimmerT_62894-T1, internal, 1033, 1133
Couldn't classify 345, 455
Sorry, prediction Augustus_model.g41876.t1 fails validation.
(CTG)	 AG	345-455	GT	ACG
(GTG)	 AG	540-688	GT	AGG
(GAT)	 AG	1033-1133	GT	CAG
(AGA)	 AG	1543-1586	AC	AAA
-recovered Augustus_model.g41876.t1, terminal, 1543, 1586
-recovered Augustus_model.g41876.t1, internal, 345, 455
-recovered Augustus_model.g41876.t1, internal, 540, 688
-recovered Augustus_model.g41876.t1, internal, 1033, 1133

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1772
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support