-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1921

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41875.t1
Couldn't classify 23, 38
Sorry, prediction GeneMark_model.109865_t fails validation.
(GTA)	 AG	23-38	GT	AGG
(GCT)	 AG	565-794	GT	GAG
(AGT)	 AG	816-854	GT	GAG
(AGA)	 AG	877-894	GC	GAG
(AAA)	 AG	921-956	GT	GGG
(GAG)	 AG	980-1175	GG	AGG
-recovered GeneMark_model.109865_t, terminal, 980, 1175
-recovered GeneMark_model.109865_t, internal, 23, 38
-recovered GeneMark_model.109865_t, internal, 565, 794
-recovered GeneMark_model.109865_t, internal, 816, 854
-recovered GeneMark_model.109865_t, internal, 877, 894
-recovered GeneMark_model.109865_t, internal, 921, 956
Valid prediction for GlimmerHMM_glimmerT_62893-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62893-T1 525-694-terminal-1 is invalid.
Couldn't classify 565, 854
Couldn't classify 877, 1212
Sorry, prediction snap_scaffold_1921-snap.1-T1 fails validation.
(GCT)	 AG	565-854	GT	GAG
(AGA)	 AG	877-1212	GT	AGG
-recovered snap_scaffold_1921-snap.1-T1, internal, 565, 854
-recovered snap_scaffold_1921-snap.1-T1, internal, 877, 1212

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1774
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support