-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1920

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 97
Couldn't classify 798, 915
Sorry, prediction GeneMark_model.109864_t fails validation.
(AGG)	 AG	35-97	GT	GAG
(GCT)	 AG	215-268	GT	AGG
(AGG)	 AG	307-330	GT	CTG
(AGG)	 AG	355-378	GT	CTG
(ACC)	 AG	405-481	GT	CAG
(AGA)	 AG	519-624	GT	AGG
(AGA)	 AG	650-706	GC	ATG
(GGA)	 AG	744-764	GT	AGG
(GAG)	 AG	798-915	GT	CTG
-recovered GeneMark_model.109864_t, internal, 35, 97
-recovered GeneMark_model.109864_t, internal, 215, 268
-recovered GeneMark_model.109864_t, internal, 307, 330
-recovered GeneMark_model.109864_t, internal, 355, 378
-recovered GeneMark_model.109864_t, internal, 405, 481
-recovered GeneMark_model.109864_t, internal, 519, 624
-recovered GeneMark_model.109864_t, internal, 650, 706
-recovered GeneMark_model.109864_t, internal, 744, 764
-recovered GeneMark_model.109864_t, internal, 798, 915
Couldn't classify 209, 268
Sorry, prediction snap_scaffold_1920-snap.1-T1 fails validation.
(ACA)	 AG	209-268	GT	AGG
(GAA)	 AG	423-546	AA	GAA
-recovered snap_scaffold_1920-snap.1-T1, terminal, 423, 546
-recovered snap_scaffold_1920-snap.1-T1, internal, 209, 268

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1774
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support