-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_192

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9498, 9628
Sorry, prediction snap_scaffold_192-snap.1-T1 fails validation.
(ATG)	 CA	644-669	GT	GAG
(CAT)	 AG	5559-5577	GT	AGG
(GAC)	 AG	8239-8314	GT	AAG
(GTC)	 AG	9498-9628	GT	AGG
-recovered snap_scaffold_192-snap.1-T1, initial, 644, 669
-recovered snap_scaffold_192-snap.1-T1, terminal, 8239, 8314
-recovered snap_scaffold_192-snap.1-T1, internal, 5559, 5577
-recovered snap_scaffold_192-snap.1-T1, internal, 8239, 8314
-recovered snap_scaffold_192-snap.1-T1, internal, 9498, 9628
Couldn't classify 9498, 9628
Sorry, prediction GlimmerHMM_glimmerT_61478-T1 fails validation.
(ATG)	 CA	7440-7512	GT	ATG
(GTC)	 AG	9498-9628	GT	AGG
-recovered GlimmerHMM_glimmerT_61478-T1, initial, 7440, 7512
-recovered GlimmerHMM_glimmerT_61478-T1, internal, 9498, 9628

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 369, 444
Sorry, prediction snap_scaffold_192-snap.2-T1 fails validation.
(GCT)	 AG	369-444	GT	TGG
(GAA)	 AG	3218-3373	GG	GAG
-recovered snap_scaffold_192-snap.2-T1, terminal, 3218, 3373
-recovered snap_scaffold_192-snap.2-T1, internal, 369, 444
Valid prediction for GeneMark_model.106890_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9628, rend_intergenic: 6597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9969
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 9628, rend_intergenic: 6597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support