-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1919

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109863_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1428, 1586
Sorry, prediction Augustus_model.g41874.t1 fails validation.
(ATG)	 TG	871-1050	GT	AGG
(GAT)	 AG	1428-1586	GT	TGG
-recovered Augustus_model.g41874.t1, initial, 871, 1050
-recovered Augustus_model.g41874.t1, internal, 1428, 1586
Couldn't classify 841, 1050
Couldn't classify 1428, 1586
Sorry, prediction snap_scaffold_1919-snap.1-T1 fails validation.
(GCT)	 AG	841-1050	GT	AGG
(GAT)	 AG	1428-1586	GT	TGG
-recovered snap_scaffold_1919-snap.1-T1, internal, 841, 1050
-recovered snap_scaffold_1919-snap.1-T1, internal, 1428, 1586
Couldn't classify 841, 1093
Sorry, prediction GlimmerHMM_glimmerT_62892-T1 fails validation.
(GCT)	 AG	841-1093	GT	TGG
(GAT)	 AG	1428-1642	GA	GAG
-recovered GlimmerHMM_glimmerT_62892-T1, terminal, 1428, 1642
-recovered GlimmerHMM_glimmerT_62892-T1, internal, 841, 1093
Couldn't classify 1609, 1626
Sorry, prediction GeneMark_model.109862_t fails validation.
(ATG)	 TG	871-1050	GT	AGG
(GAT)	 AG	1428-1576	GT	AAG
(AAC)	 AG	1609-1626	GT	GAG
-recovered GeneMark_model.109862_t, initial, 871, 1050
-recovered GeneMark_model.109862_t, internal, 1428, 1576
-recovered GeneMark_model.109862_t, internal, 1609, 1626

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1774
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support