-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1918

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 129, 144
Couldn't classify 1525, 1630
Sorry, prediction GeneMark_model.109861_t fails validation.
(AGA)	 AG	129-144	GT	GAG
(AAG)	 AG	168-259	GT	AGG
(GGC)	 AG	358-550	GT	GGG
(AGG)	 AG	580-712	GT	ACG
(GCC)	 AG	1237-1256	GT	ACG
(AGA)	 AG	1419-1430	GT	GAG
(GAG)	 AG	1525-1630	GT	GGG
-recovered GeneMark_model.109861_t, internal, 129, 144
-recovered GeneMark_model.109861_t, internal, 168, 259
-recovered GeneMark_model.109861_t, internal, 358, 550
-recovered GeneMark_model.109861_t, internal, 580, 712
-recovered GeneMark_model.109861_t, internal, 1237, 1256
-recovered GeneMark_model.109861_t, internal, 1419, 1430
-recovered GeneMark_model.109861_t, internal, 1525, 1630

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 662, 687
Couldn't classify 1652, 1732
Sorry, prediction snap_scaffold_1918-snap.1-T1 fails validation.
(GGA)	 AG	662-687	GT	CGG
(ATG)	 AG	1346-1435	GT	TGG
(ATC)	 AG	1652-1732	GT	AGG
-recovered snap_scaffold_1918-snap.1-T1, initial, 1346, 1435
-recovered snap_scaffold_1918-snap.1-T1, internal, 662, 687
-recovered snap_scaffold_1918-snap.1-T1, internal, 1346, 1435
-recovered snap_scaffold_1918-snap.1-T1, internal, 1652, 1732
Couldn't classify 1652, 1732
Sorry, prediction Augustus_model.g41873.t1 fails validation.
(ATG)	 AG	921-950	GT	GCG
(ATG)	 AG	1346-1435	GT	TGG
(ATC)	 AG	1652-1732	GT	AGG
-recovered Augustus_model.g41873.t1, initial, 921, 950
-recovered Augustus_model.g41873.t1, initial, 1346, 1435
-recovered Augustus_model.g41873.t1, internal, 921, 950
-recovered Augustus_model.g41873.t1, internal, 1346, 1435
-recovered Augustus_model.g41873.t1, internal, 1652, 1732

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1775
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support