-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1915

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41872.t1
add_exon() Sorry, Augustus_model.g41872.t1 103-212-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 32, 37
Couldn't classify 1541, 1633
Sorry, prediction GeneMark_model.109860_t fails validation.
(GGA)	 AG	32-37	GT	GTG
(GGA)	 AG	62-67	GT	GAG
(AGC)	 AG	110-223	GT	CTG
(AGA)	 AG	362-373	GT	GAG
(GCT)	 AG	518-601	GT	GTG
(AGA)	 AG	632-650	GT	AGG
(GGG)	 AG	679-686	GT	AGG
(GCT)	 AG	712-738	GT	AGG
(GCT)	 AG	1024-1078	GT	AGG
(GGG)	 AG	1153-1160	GT	AGG
(GCT)	 AG	1186-1198	GT	AGG
(GGG)	 AG	1248-1255	GT	AGG
(GCT)	 AG	1281-1313	GT	GGG
(GCT)	 AG	1345-1363	GT	AGG
(GTG)	 AG	1394-1401	GT	AGG
(GCT)	 AG	1427-1450	GT	AGG
(GCT)	 AG	1484-1492	GT	GTG
(GCT)	 AG	1541-1633	GT	CTG
-recovered GeneMark_model.109860_t, terminal, 1427, 1450
-recovered GeneMark_model.109860_t, internal, 32, 37
-recovered GeneMark_model.109860_t, internal, 62, 67
-recovered GeneMark_model.109860_t, internal, 110, 223
-recovered GeneMark_model.109860_t, internal, 362, 373
-recovered GeneMark_model.109860_t, internal, 518, 601
-recovered GeneMark_model.109860_t, internal, 632, 650
-recovered GeneMark_model.109860_t, internal, 679, 686
-recovered GeneMark_model.109860_t, internal, 712, 738
-recovered GeneMark_model.109860_t, internal, 1024, 1078
-recovered GeneMark_model.109860_t, internal, 1153, 1160
-recovered GeneMark_model.109860_t, internal, 1186, 1198
-recovered GeneMark_model.109860_t, internal, 1248, 1255
-recovered GeneMark_model.109860_t, internal, 1281, 1313
-recovered GeneMark_model.109860_t, internal, 1345, 1363
-recovered GeneMark_model.109860_t, internal, 1394, 1401
-recovered GeneMark_model.109860_t, internal, 1427, 1450
-recovered GeneMark_model.109860_t, internal, 1484, 1492
-recovered GeneMark_model.109860_t, internal, 1541, 1633

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1776
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support