-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1914

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62890-T1
Couldn't classify 76, 255
Sorry, prediction snap_scaffold_1914-snap.1-T1 fails validation.
(CGT)	 AG	76-255	GT	CGG
-recovered snap_scaffold_1914-snap.1-T1, internal, 76, 255
Couldn't classify 99, 255
Sorry, prediction GeneMark_model.109858_t fails validation.
(AGG)	 AG	99-255	GT	CGG
(CAG)	 AG	396-422	GG	AAG
-recovered GeneMark_model.109858_t, terminal, 396, 422
-recovered GeneMark_model.109858_t, internal, 99, 255

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 35, 46
Sorry, prediction GeneMark_model.109859_t fails validation.
(AGG)	 AG	35-46	GT	AAG
(AAG)	 AG	68-91	GT	AGG
(GGG)	 AG	1067-1205	CA	AGC
-recovered GeneMark_model.109859_t, terminal, 1067, 1205
-recovered GeneMark_model.109859_t, internal, 35, 46
-recovered GeneMark_model.109859_t, internal, 68, 91

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1777
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support