-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1913

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 573, 599
Sorry, prediction GeneMark_model.109857_t fails validation.
(CCA)	 AG	573-599	GT	GTG
(AGC)	 AG	630-803	GT	TTG
(ACG)	 AG	1146-1214	GT	CTG
(AGA)	 AG	1441-1756	AG	AGA
-recovered GeneMark_model.109857_t, terminal, 1441, 1756
-recovered GeneMark_model.109857_t, internal, 573, 599
-recovered GeneMark_model.109857_t, internal, 630, 803
-recovered GeneMark_model.109857_t, internal, 1146, 1214

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 554, 700
Couldn't classify 1613, 1732
Sorry, prediction snap_scaffold_1913-snap.1-T1 fails validation.
(ACA)	 AG	554-700	GT	TGG
(GAG)	 AG	1175-1270	GT	AGG
(ATC)	 AG	1613-1732	GT	AGG
-recovered snap_scaffold_1913-snap.1-T1, internal, 554, 700
-recovered snap_scaffold_1913-snap.1-T1, internal, 1175, 1270
-recovered snap_scaffold_1913-snap.1-T1, internal, 1613, 1732
Couldn't classify 554, 700
Couldn't classify 1613, 1750
Sorry, prediction pasa_asmbl_22779.p1 fails validation.
(ACA)	 AG	554-700	GT	TGG
(GAG)	 AG	1175-1270	GT	AGG
(ATC)	 AG	1613-1750	TA	GAT
-recovered pasa_asmbl_22779.p1, internal, 554, 700
-recovered pasa_asmbl_22779.p1, internal, 1175, 1270
Couldn't classify 554, 700
Sorry, prediction GlimmerHMM_glimmerT_62889-T1 fails validation.
(ACA)	 AG	554-700	GT	TGG
(GAG)	 AG	1175-1270	GT	AGG
(ATC)	 AG	1613-1753	CT	AAC
-recovered GlimmerHMM_glimmerT_62889-T1, terminal, 1613, 1753
-recovered GlimmerHMM_glimmerT_62889-T1, internal, 554, 700
-recovered GlimmerHMM_glimmerT_62889-T1, internal, 1175, 1270
Couldn't classify 554, 700
Couldn't classify 1613, 1732
Sorry, prediction Augustus_model.g41871.t1 fails validation.
(ACA)	 AG	554-700	GT	TGG
(GAG)	 AG	1175-1270	GT	AGG
(ATC)	 AG	1613-1732	GT	AGG
-recovered Augustus_model.g41871.t1, internal, 554, 700
-recovered Augustus_model.g41871.t1, internal, 1175, 1270
-recovered Augustus_model.g41871.t1, internal, 1613, 1732

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1779
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support