-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1912

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1511, 1601
Sorry, prediction snap_scaffold_1912-snap.1-T1 fails validation.
(ATG)	 AA	152-194	GT	GAG
(CAC)	 AG	1059-1158	GT	GAG
(ACG)	 AG	1511-1601	GT	TGG
-recovered snap_scaffold_1912-snap.1-T1, initial, 152, 194
add_exon() Sorry, snap_scaffold_1912-snap.1-T1 1059-1158-terminal-3 is invalid.
-recovered snap_scaffold_1912-snap.1-T1, terminal, 1059, 1158
-recovered snap_scaffold_1912-snap.1-T1, internal, 1059, 1158
-recovered snap_scaffold_1912-snap.1-T1, internal, 1511, 1601
Couldn't classify 1059, 1158
Sorry, prediction Augustus_model.g41870.t1 fails validation.
(CAC)	 AG	1059-1158	GT	GAG
(ACG)	 AG	1511-1619	AG	GAA
add_exon() Sorry, Augustus_model.g41870.t1 1059-1158-terminal-3 is invalid.
-recovered Augustus_model.g41870.t1, terminal, 1059, 1158
-recovered Augustus_model.g41870.t1, terminal, 1511, 1619
-recovered Augustus_model.g41870.t1, internal, 1059, 1158

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 355, 442
Couldn't classify 468, 583
Sorry, prediction GeneMark_model.109856_t fails validation.
(GGT)	 AG	355-442	GT	GCG
(ACA)	 AG	468-583	GT	TTG
-recovered GeneMark_model.109856_t, internal, 355, 442
-recovered GeneMark_model.109856_t, internal, 468, 583

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1780
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support