-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_191

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106886_t
Couldn't classify 8751, 9223
Sorry, prediction snap_scaffold_191-snap.2-T1 fails validation.
(ATG)	 AT	5829-5913	GT	AGG
(CCC)	 AG	8751-9223	GT	TGG
-recovered snap_scaffold_191-snap.2-T1, initial, 5829, 5913
-recovered snap_scaffold_191-snap.2-T1, internal, 8751, 9223
Valid prediction for GeneMark_model.106888_t
Valid prediction for GeneMark_model.106884_t
Valid prediction for GlimmerHMM_glimmerT_61477-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106887_t
Valid prediction for GlimmerHMM_glimmerT_61476-T1
Couldn't classify 9962, 9985
Sorry, prediction GeneMark_model.106883_t fails validation.
(ATG)	 AA	9326-9351	GT	GTG
(ACA)	 AG	9381-9389	GT	GAG
(GAG)	 AG	9416-9544	GT	AAG
(AGA)	 AG	9568-9663	GT	AGG
(CAT)	 AG	9962-9985	GC	CTG
-recovered GeneMark_model.106883_t, initial, 9326, 9351
-recovered GeneMark_model.106883_t, terminal, 9381, 9389
-recovered GeneMark_model.106883_t, internal, 9381, 9389
-recovered GeneMark_model.106883_t, internal, 9416, 9544
-recovered GeneMark_model.106883_t, internal, 9568, 9663
-recovered GeneMark_model.106883_t, internal, 9962, 9985
Couldn't classify 437, 575
Sorry, prediction snap_scaffold_191-snap.1-T1 fails validation.
(CCT)	 AG	437-575	GT	AGG
(GGT)	 AG	1180-1384	GT	GAG
(GTA)	 AG	1659-1710	GT	AAG
(TCC)	 AG	4818-5181	GG	GAG
add_exon() Sorry, snap_scaffold_191-snap.1-T1 1659-1710-terminal-3 is invalid.
-recovered snap_scaffold_191-snap.1-T1, terminal, 1659, 1710
-recovered snap_scaffold_191-snap.1-T1, terminal, 4818, 5181
-recovered snap_scaffold_191-snap.1-T1, internal, 437, 575
-recovered snap_scaffold_191-snap.1-T1, internal, 1180, 1384
-recovered snap_scaffold_191-snap.1-T1, internal, 1659, 1710
Valid prediction for GeneMark_model.106885_t
Valid prediction for GeneMark_model.106889_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9561, rend_intergenic: 5829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9997
-exon list size: 58


building trellis

1.7    
3.3    
5.0    
6.7    
8.3    
10.0    
11.7    
13.3    
15.0    
16.7    
18.3    
20.0    
21.7    
23.3    
25.0    
26.7    
28.3    
30.0    
31.7    
33.3    
35.0    
36.7    
38.3    
40.0    
41.7    
43.3    
45.0    
46.7    
48.3    
50.0    
51.7    
53.3    
55.0    
56.7    
58.3    
60.0    
61.7    
63.3    
65.0    
66.7    
68.3    
70.0    
71.7    
73.3    
75.0    
76.7    
78.3    
80.0    
81.7    
83.3    
85.0    
86.7    
88.3    
90.0    
91.7    
93.3    
95.0    
96.7    
98.3    
-found 5 predictions from path traversal
Error with prediction: snap lend_intergenic: 9561, rend_intergenic: 5829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support