-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1908

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 61, 69
Couldn't classify 1735, 1741
Sorry, prediction GeneMark_model.109854_t fails validation.
(GGG)	 AG	61-69	GT	GGG
(AAA)	 AG	127-135	GT	GGG
(AGA)	 AG	180-191	GT	AGG
(AGG)	 AG	241-249	GT	GGG
(AGA)	 AG	285-299	GT	GGG
(AGA)	 AG	540-548	GT	GGG
(GTT)	 AG	674-679	GT	GGG
(AGA)	 AG	711-722	GT	AGG
(GGG)	 AG	770-778	GT	GGG
(AGA)	 AG	814-822	GT	GGG
(AGA)	 AG	860-868	GT	GGG
(AGA)	 AG	902-916	GT	GGG
(AGG)	 AG	948-962	GT	GGG
(GGT)	 AG	986-1012	GT	GGG
(AGA)	 AG	1036-1056	GT	GGG
(AGA)	 AG	1082-1096	GT	GGG
(GGG)	 AG	1126-1134	GT	GGG
(AGA)	 AG	1172-1183	GT	AGG
(AGA)	 AG	1272-1280	GT	GGG
(AGA)	 AG	1316-1324	GT	GGG
(AGA)	 AG	1354-1362	GT	GGG
(GGG)	 AG	1398-1412	GT	GGG
(AGG)	 AG	1483-1497	GT	GGG
(AGA)	 AG	1533-1541	GT	GGG
(AGG)	 AG	1585-1593	GT	GGG
(GGG)	 AG	1623-1631	GT	GGG
(AGA)	 AG	1735-1741	GT	GGG
-recovered GeneMark_model.109854_t, terminal, 180, 191
-recovered GeneMark_model.109854_t, terminal, 711, 722
-recovered GeneMark_model.109854_t, terminal, 1172, 1183
-recovered GeneMark_model.109854_t, internal, 61, 69
-recovered GeneMark_model.109854_t, internal, 127, 135
-recovered GeneMark_model.109854_t, internal, 180, 191
-recovered GeneMark_model.109854_t, internal, 241, 249
-recovered GeneMark_model.109854_t, internal, 285, 299
-recovered GeneMark_model.109854_t, internal, 540, 548
-recovered GeneMark_model.109854_t, internal, 674, 679
-recovered GeneMark_model.109854_t, internal, 711, 722
-recovered GeneMark_model.109854_t, internal, 770, 778
-recovered GeneMark_model.109854_t, internal, 814, 822
-recovered GeneMark_model.109854_t, internal, 860, 868
-recovered GeneMark_model.109854_t, internal, 902, 916
-recovered GeneMark_model.109854_t, internal, 948, 962
-recovered GeneMark_model.109854_t, internal, 986, 1012
-recovered GeneMark_model.109854_t, internal, 1036, 1056
-recovered GeneMark_model.109854_t, internal, 1082, 1096
-recovered GeneMark_model.109854_t, internal, 1126, 1134
-recovered GeneMark_model.109854_t, internal, 1172, 1183
-recovered GeneMark_model.109854_t, internal, 1272, 1280
-recovered GeneMark_model.109854_t, internal, 1316, 1324
-recovered GeneMark_model.109854_t, internal, 1354, 1362
-recovered GeneMark_model.109854_t, internal, 1398, 1412
-recovered GeneMark_model.109854_t, internal, 1483, 1497
-recovered GeneMark_model.109854_t, internal, 1533, 1541
-recovered GeneMark_model.109854_t, internal, 1585, 1593
-recovered GeneMark_model.109854_t, internal, 1623, 1631
-recovered GeneMark_model.109854_t, internal, 1735, 1741

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1787
-exon list size: 70


building trellis

1.4    
2.8    
4.2    
5.6    
6.9    
8.3    
9.7    
11.1    
12.5    
13.9    
15.3    
16.7    
18.1    
19.4    
20.8    
22.2    
23.6    
25.0    
26.4    
27.8    
29.2    
30.6    
31.9    
33.3    
34.7    
36.1    
37.5    
38.9    
40.3    
41.7    
43.1    
44.4    
45.8    
47.2    
48.6    
50.0    
51.4    
52.8    
54.2    
55.6    
56.9    
58.3    
59.7    
61.1    
62.5    
63.9    
65.3    
66.7    
68.1    
69.4    
70.8    
72.2    
73.6    
75.0    
76.4    
77.8    
79.2    
80.6    
81.9    
83.3    
84.7    
86.1    
87.5    
88.9    
90.3    
91.7    
93.1    
94.4    
95.8    
97.2    
98.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support