-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1906

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1262, 1282
Couldn't classify 1740, 1745
Sorry, prediction GeneMark_model.109852_t fails validation.
(AGT)	 AG	1262-1282	GT	GAG
(AGC)	 AG	1312-1317	GT	GAG
(AGT)	 AG	1342-1362	GT	GAG
(AGC)	 AG	1390-1395	GT	GAG
(AGT)	 AG	1445-1465	GT	GAG
(AGT)	 AG	1495-1515	GT	GAG
(AGC)	 AG	1540-1545	GT	GAG
(AGT)	 AG	1570-1605	GT	GAG
(TAG)	 AG	1632-1655	GT	GAG
(AAC)	 AG	1680-1715	GT	GAG
(AGC)	 AG	1740-1745	GT	GAG
-recovered GeneMark_model.109852_t, internal, 1262, 1282
-recovered GeneMark_model.109852_t, internal, 1312, 1317
-recovered GeneMark_model.109852_t, internal, 1342, 1362
-recovered GeneMark_model.109852_t, internal, 1390, 1395
-recovered GeneMark_model.109852_t, internal, 1445, 1465
-recovered GeneMark_model.109852_t, internal, 1495, 1515
-recovered GeneMark_model.109852_t, internal, 1540, 1545
-recovered GeneMark_model.109852_t, internal, 1570, 1605
-recovered GeneMark_model.109852_t, internal, 1632, 1655
-recovered GeneMark_model.109852_t, internal, 1680, 1715
-recovered GeneMark_model.109852_t, internal, 1740, 1745

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1789
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support