-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1901

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 36, 64
Sorry, prediction GeneMark_model.109847_t fails validation.
(TCA)	 AG	36-64	GT	GGG
(GTT)	 AG	309-529	GT	CTG
(AGC)	 AG	553-593	GC	GGG
(AGG)	 AG	636-773	GT	AGG
(GGG)	 AG	803-853	GT	AAG
(GCG)	 AG	907-939	GT	AAG
(AAG)	 AG	1018-1043	GT	TCG
(CAA)	 AG	1151-1298	GT	GGG
(AGG)	 AG	1327-1410	GT	AGG
(TGA)	 AG	1434-1503	CA	AGC
-recovered GeneMark_model.109847_t, terminal, 1434, 1503
-recovered GeneMark_model.109847_t, internal, 36, 64
-recovered GeneMark_model.109847_t, internal, 309, 529
-recovered GeneMark_model.109847_t, internal, 553, 593
-recovered GeneMark_model.109847_t, internal, 636, 773
-recovered GeneMark_model.109847_t, internal, 803, 853
-recovered GeneMark_model.109847_t, internal, 907, 939
-recovered GeneMark_model.109847_t, internal, 1018, 1043
-recovered GeneMark_model.109847_t, internal, 1151, 1298
-recovered GeneMark_model.109847_t, internal, 1327, 1410

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 590, 710
Couldn't classify 1240, 1473
Sorry, prediction snap_scaffold_1901-snap.1-T1 fails validation.
(GGG)	 AG	590-710	GT	CCG
(CGC)	 AG	1240-1473	GT	AGG
-recovered snap_scaffold_1901-snap.1-T1, internal, 590, 710
-recovered snap_scaffold_1901-snap.1-T1, internal, 1240, 1473
Couldn't classify 590, 721
Sorry, prediction GlimmerHMM_glimmerT_62888-T1 fails validation.
(GGG)	 AG	590-721	GT	AAG
(CGC)	 AG	1240-1554	TG	AGT
-recovered GlimmerHMM_glimmerT_62888-T1, terminal, 1240, 1554
-recovered GlimmerHMM_glimmerT_62888-T1, internal, 590, 721
Couldn't classify 1240, 1473
Sorry, prediction Augustus_model.g41868.t1 fails validation.
(ATG)	 GA	165-190	GT	AGG
(GGG)	 AG	590-710	GT	CCG
(CGC)	 AG	1240-1473	GT	AGG
-recovered Augustus_model.g41868.t1, initial, 165, 190
-recovered Augustus_model.g41868.t1, internal, 590, 710
-recovered Augustus_model.g41868.t1, internal, 1240, 1473

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1795
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support