-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1900

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62886-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62886-T1 669-967-terminal-1 is invalid.
Couldn't classify 669, 715
Sorry, prediction Augustus_model.g41867.t1 fails validation.
(CCT)	 AG	669-715	GT	TGG
(GTT)	 AG	802-967	GC	AGG
-recovered Augustus_model.g41867.t1, terminal, 802, 967
-recovered Augustus_model.g41867.t1, internal, 669, 715
-recovered Augustus_model.g41867.t1, internal, 802, 967
Valid prediction for GlimmerHMM_glimmerT_62887-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 457, 773
Couldn't classify 1635, 1682
Sorry, prediction GeneMark_model.109846_t fails validation.
(TGC)	 AG	457-773	GT	ATG
(GGA)	 AG	1152-1217	GT	AGG
(AGA)	 AG	1517-1534	GT	GGG
(AGA)	 AG	1571-1600	GT	TGG
(GTG)	 AG	1635-1682	GT	CAG
-recovered GeneMark_model.109846_t, internal, 457, 773
-recovered GeneMark_model.109846_t, internal, 1152, 1217
-recovered GeneMark_model.109846_t, internal, 1517, 1534
-recovered GeneMark_model.109846_t, internal, 1571, 1600
-recovered GeneMark_model.109846_t, internal, 1635, 1682
Valid prediction for snap_scaffold_1900-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1795
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support