-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_190

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106882_t
Couldn't classify 737, 770
Sorry, prediction snap_scaffold_190-snap.2-T1 fails validation.
(GCT)	 AG	737-770	GT	AGG
(TGA)	 AG	1025-1126	GT	AGG
(TTT)	 AG	5196-5257	TT	GAT
-recovered snap_scaffold_190-snap.2-T1, terminal, 5196, 5257
-recovered snap_scaffold_190-snap.2-T1, internal, 737, 770
-recovered snap_scaffold_190-snap.2-T1, internal, 1025, 1126

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40884.t1
Valid prediction for GeneMark_model.106881_t
Couldn't classify 846, 1032
Sorry, prediction GlimmerHMM_glimmerT_61475-T1 fails validation.
(GAA)	 AG	846-1032	GT	CTG
(ATC)	 AG	1266-1532	AG	AGA
-recovered GlimmerHMM_glimmerT_61475-T1, terminal, 1266, 1532
-recovered GlimmerHMM_glimmerT_61475-T1, internal, 846, 1032
Couldn't classify 9541, 9615
Sorry, prediction Augustus_model.g40883.t1 fails validation.
(ATG)	 AC	8313-8435	GT	AGG
(GTG)	 AG	8776-8964	GT	AGG
(GGT)	 AG	9201-9257	GT	AGG
(ATC)	 AG	9541-9615	GT	AGG
-recovered Augustus_model.g40883.t1, initial, 8313, 8435
-recovered Augustus_model.g40883.t1, internal, 8776, 8964
-recovered Augustus_model.g40883.t1, internal, 9201, 9257
-recovered Augustus_model.g40883.t1, internal, 9541, 9615
Couldn't classify 9541, 9615
Sorry, prediction snap_scaffold_190-snap.1-T1 fails validation.
(ATG)	 CA	6888-6905	GT	AAG
(GCT)	 AG	8367-8435	GT	AGG
(GTG)	 AG	8776-8964	GT	AGG
(GGT)	 AG	9201-9257	GT	AGG
(ATC)	 AG	9541-9615	GT	AGG
-recovered snap_scaffold_190-snap.1-T1, initial, 6888, 6905
-recovered snap_scaffold_190-snap.1-T1, internal, 8367, 8435
-recovered snap_scaffold_190-snap.1-T1, internal, 8776, 8964
-recovered snap_scaffold_190-snap.1-T1, internal, 9201, 9257
-recovered snap_scaffold_190-snap.1-T1, internal, 9541, 9615
Valid prediction for GlimmerHMM_glimmerT_61474-T1
Couldn't classify 200, 276
Sorry, prediction snap_scaffold_190-snap.3-T1 fails validation.
(GGG)	 AG	200-276	GT	AGG
(ACT)	 AG	391-434	GT	AGG
(GAA)	 AG	846-1032	GT	CTG
(ATC)	 AG	1266-1532	AG	AGA
-recovered snap_scaffold_190-snap.3-T1, terminal, 1266, 1532
-recovered snap_scaffold_190-snap.3-T1, internal, 200, 276
-recovered snap_scaffold_190-snap.3-T1, internal, 391, 434
-recovered snap_scaffold_190-snap.3-T1, internal, 846, 1032
Couldn't classify 199, 276
Sorry, prediction pasa_asmbl_22776.p1 fails validation.
(GGG)	 CA	199-276	GT	AGG
(ACT)	 AG	391-434	GT	AGG
(GAA)	 AG	846-1032	GT	CTG
(ATC)	 AG	1266-1532	AG	AGA
-recovered pasa_asmbl_22776.p1, terminal, 1266, 1532
-recovered pasa_asmbl_22776.p1, internal, 391, 434
-recovered pasa_asmbl_22776.p1, internal, 846, 1032
Couldn't classify 9541, 9615
Sorry, prediction GeneMark_model.106880_t fails validation.
(ATG)	 AC	8313-8321	GT	ATG
(GCT)	 AG	8367-8435	GT	AGG
(GTG)	 AG	8776-8964	GT	AGG
(GGT)	 AG	9201-9257	GT	AGG
(ATC)	 AG	9541-9615	GT	AGG
-recovered GeneMark_model.106880_t, initial, 8313, 8321
-recovered GeneMark_model.106880_t, internal, 8367, 8435
-recovered GeneMark_model.106880_t, internal, 8776, 8964
-recovered GeneMark_model.106880_t, internal, 9201, 9257
-recovered GeneMark_model.106880_t, internal, 9541, 9615

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3112, rend_intergenic: 737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9999
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3112, rend_intergenic: 737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support