-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_9575887-10041142

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.79759_t
Valid prediction for Augustus_model.g30497.t1
Valid prediction for GeneMark_model.79764_t
Valid prediction for GeneMark_model.79765_t
Valid prediction for GeneMark_model.79766_t
Valid prediction for Augustus_model.g30503.t1
Valid prediction for GlimmerHMM_glimmerT_45703-T1
Valid prediction for GlimmerHMM_glimmerT_45707-T1
Valid prediction for GeneMark_model.79774_t
Valid prediction for GlimmerHMM_glimmerT_45704-T1
Valid prediction for snap_scaffold_19-snap.1890-T1
Valid prediction for snap_scaffold_19-snap.1906-T1
Valid prediction for snap_scaffold_19-snap.1903-T1
Valid prediction for Augustus_model.g30502.t1
Valid prediction for GlimmerHMM_glimmerT_45712-T1
Valid prediction for GeneMark_model.79757_t
Valid prediction for GlimmerHMM_glimmerT_45717-T1
Valid prediction for GlimmerHMM_glimmerT_45708-T1
Valid prediction for snap_scaffold_19-snap.1895-T1
Valid prediction for GeneMark_model.79762_t
Valid prediction for GeneMark_model.79763_t
Valid prediction for GlimmerHMM_glimmerT_45718-T1
Valid prediction for snap_scaffold_19-snap.1889-T1
Valid prediction for GeneMark_model.79753_t
Valid prediction for GeneMark_model.79778_t
Valid prediction for GlimmerHMM_glimmerT_45720-T1
Valid prediction for snap_scaffold_19-snap.1904-T1
Valid prediction for GlimmerHMM_glimmerT_45715-T1
Valid prediction for GlimmerHMM_glimmerT_45719-T1
Valid prediction for GeneMark_model.79776_t
Valid prediction for snap_scaffold_19-snap.1894-T1
Valid prediction for Augustus_model.g30498.t1
Valid prediction for snap_scaffold_19-snap.1905-T1
Valid prediction for snap_scaffold_19-snap.1898-T1
Valid prediction for snap_scaffold_19-snap.1897-T1
Valid prediction for GeneMark_model.79761_t
Valid prediction for GeneMark_model.79771_t
Valid prediction for GlimmerHMM_glimmerT_45716-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_45722-T1
Valid prediction for Augustus_model.g30499.t1
Valid prediction for snap_scaffold_19-snap.1902-T1
Valid prediction for Augustus_model.g30504.t1
Valid prediction for GlimmerHMM_glimmerT_45723-T1
Valid prediction for GeneMark_model.79775_t
Valid prediction for GeneMark_model.79754_t
Valid prediction for GlimmerHMM_glimmerT_45706-T1
Valid prediction for GlimmerHMM_glimmerT_45709-T1
Valid prediction for GlimmerHMM_glimmerT_45725-T1
Valid prediction for GeneMark_model.79767_t
Valid prediction for GlimmerHMM_glimmerT_45714-T1
Valid prediction for GeneMark_model.79768_t
Valid prediction for GeneMark_model.79777_t
Valid prediction for snap_scaffold_19-snap.1908-T1
Valid prediction for GlimmerHMM_glimmerT_45721-T1
Valid prediction for snap_scaffold_19-snap.1910-T1
Valid prediction for GeneMark_model.79779_t
Valid prediction for GlimmerHMM_glimmerT_45705-T1
Valid prediction for GeneMark_model.79760_t
Valid prediction for GeneMark_model.79772_t
Valid prediction for snap_scaffold_19-snap.1899-T1
Valid prediction for GeneMark_model.79769_t
Valid prediction for GeneMark_model.79756_t
Valid prediction for GlimmerHMM_glimmerT_45713-T1
Valid prediction for Augustus_model.g30501.t1
Valid prediction for snap_scaffold_19-snap.1907-T1
Valid prediction for Augustus_model.g30500.t1
Valid prediction for GlimmerHMM_glimmerT_45724-T1
Valid prediction for snap_scaffold_19-snap.1891-T1
Valid prediction for Augustus_model.g30496.t1
Valid prediction for snap_scaffold_19-snap.1892-T1
Valid prediction for GeneMark_model.79758_t
Valid prediction for snap_scaffold_19-snap.1901-T1
Valid prediction for snap_scaffold_19-snap.1893-T1
Valid prediction for GeneMark_model.79773_t
Valid prediction for GlimmerHMM_glimmerT_45711-T1
Valid prediction for GlimmerHMM_glimmerT_45710-T1
Valid prediction for snap_scaffold_19-snap.1909-T1
Valid prediction for GeneMark_model.79780_t
Valid prediction for GeneMark_model.79755_t
Valid prediction for snap_scaffold_19-snap.1900-T1
Valid prediction for snap_scaffold_19-snap.1896-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 375995, rend_intergenic: 371060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 414961, rend_intergenic: 412551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 465256
-exon list size: 300


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.6    
3.0    
3.3    
3.6    
4.0    
4.3    
4.6    
5.0    
5.3    
5.6    
6.0    
6.3    
6.6    
7.0    
7.3    
7.6    
7.9    
8.3    
8.6    
8.9    
9.3    
9.6    
9.9    
10.3    
10.6    
10.9    
11.3    
11.6    
11.9    
12.3    
12.6    
12.9    
13.2    
13.6    
13.9    
14.2    
14.6    
14.9    
15.2    
15.6    
15.9    
16.2    
16.6    
16.9    
17.2    
17.5    
17.9    
18.2    
18.5    
18.9    
19.2    
19.5    
19.9    
20.2    
20.5    
20.9    
21.2    
21.5    
21.9    
22.2    
22.5    
22.8    
23.2    
23.5    
23.8    
24.2    
24.5    
24.8    
25.2    
25.5    
25.8    
26.2    
26.5    
26.8    
27.2    
27.5    
27.8    
28.1    
28.5    
28.8    
29.1    
29.5    
29.8    
30.1    
30.5    
30.8    
31.1    
31.5    
31.8    
32.1    
32.5    
32.8    
33.1    
33.4    
33.8    
34.1    
34.4    
34.8    
35.1    
35.4    
35.8    
36.1    
36.4    
36.8    
37.1    
37.4    
37.7    
38.1    
38.4    
38.7    
39.1    
39.4    
39.7    
40.1    
40.4    
40.7    
41.1    
41.4    
41.7    
42.1    
42.4    
42.7    
43.0    
43.4    
43.7    
44.0    
44.4    
44.7    
45.0    
45.4    
45.7    
46.0    
46.4    
46.7    
47.0    
47.4    
47.7    
48.0    
48.3    
48.7    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.3    
51.7    
52.0    
52.3    
52.6    
53.0    
53.3    
53.6    
54.0    
54.3    
54.6    
55.0    
55.3    
55.6    
56.0    
56.3    
56.6    
57.0    
57.3    
57.6    
57.9    
58.3    
58.6    
58.9    
59.3    
59.6    
59.9    
60.3    
60.6    
60.9    
61.3    
61.6    
61.9    
62.3    
62.6    
62.9    
63.2    
63.6    
63.9    
64.2    
64.6    
64.9    
65.2    
65.6    
65.9    
66.2    
66.6    
66.9    
67.2    
67.5    
67.9    
68.2    
68.5    
68.9    
69.2    
69.5    
69.9    
70.2    
70.5    
70.9    
71.2    
71.5    
71.9    
72.2    
72.5    
72.8    
73.2    
73.5    
73.8    
74.2    
74.5    
74.8    
75.2    
75.5    
75.8    
76.2    
76.5    
76.8    
77.2    
77.5    
77.8    
78.1    
78.5    
78.8    
79.1    
79.5    
79.8    
80.1    
80.5    
80.8    
81.1    
81.5    
81.8    
82.1    
82.5    
82.8    
83.1    
83.4    
83.8    
84.1    
84.4    
84.8    
85.1    
85.4    
85.8    
86.1    
86.4    
86.8    
87.1    
87.4    
87.7    
88.1    
88.4    
88.7    
89.1    
89.4    
89.7    
90.1    
90.4    
90.7    
91.1    
91.4    
91.7    
92.1    
92.4    
92.7    
93.0    
93.4    
93.7    
94.0    
94.4    
94.7    
95.0    
95.4    
95.7    
96.0    
96.4    
96.7    
97.0    
97.4    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 13 predictions from path traversal
Error with prediction: snap lend_intergenic: 375995, rend_intergenic: 371060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 414961, rend_intergenic: 412551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 81828
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 81544
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 81228
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 52218
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 51721
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 48900
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 34262
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15224
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 15282 - 34262
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 22722 - 34262

-building DP trellis

-building trellis in range 34305 - 48900
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 34305 - 47131
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 52229 - 81228
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 52229 - 78733
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 52229 - 76456
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 55874 - 76456
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 63858 - 76456
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 66246 - 76456