-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_8949669-9099511

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_19-snap.1765-T1
Valid prediction for GeneMark_model.79630_t
Valid prediction for GeneMark_model.79623_t
Valid prediction for GlimmerHMM_glimmerT_45611-T1
Valid prediction for GeneMark_model.79577_t
Valid prediction for GeneMark_model.79572_t
Valid prediction for GeneMark_model.79613_t
Valid prediction for GeneMark_model.79589_t
Valid prediction for Augustus_model.g30424.t1
Valid prediction for GlimmerHMM_glimmerT_45594-T1
Valid prediction for GeneMark_model.79607_t
Valid prediction for GeneMark_model.79578_t
Valid prediction for snap_scaffold_19-snap.1744-T1
Valid prediction for GeneMark_model.79590_t
Valid prediction for GlimmerHMM_glimmerT_45608-T1
Valid prediction for GlimmerHMM_glimmerT_45601-T1
Valid prediction for GlimmerHMM_glimmerT_45596-T1
Valid prediction for snap_scaffold_19-snap.1749-T1
Valid prediction for GeneMark_model.79609_t
Valid prediction for snap_scaffold_19-snap.1771-T1
Valid prediction for snap_scaffold_19-snap.1747-T1
Valid prediction for GeneMark_model.79603_t
Valid prediction for GeneMark_model.79611_t
Valid prediction for snap_scaffold_19-snap.1745-T1
Valid prediction for snap_scaffold_19-snap.1768-T1
Valid prediction for GeneMark_model.79583_t
Valid prediction for GlimmerHMM_glimmerT_45604-T1
Valid prediction for GeneMark_model.79627_t
Valid prediction for snap_scaffold_19-snap.1767-T1
Valid prediction for snap_scaffold_19-snap.1742-T1
Valid prediction for GeneMark_model.79597_t
Valid prediction for GeneMark_model.79633_t
Valid prediction for HiQ_model.g30436.t1
Valid prediction for GlimmerHMM_glimmerT_45597-T1
Valid prediction for pasa_asmbl_22372.p1
Valid prediction for GeneMark_model.79605_t
Valid prediction for GeneMark_model.79621_t
Valid prediction for GlimmerHMM_glimmerT_45607-T1
Valid prediction for snap_scaffold_19-snap.1760-T1
Valid prediction for GeneMark_model.79593_t
Valid prediction for snap_scaffold_19-snap.1763-T1
Valid prediction for Augustus_model.g30425.t1
Valid prediction for Augustus_model.g30434.t1
Valid prediction for snap_scaffold_19-snap.1761-T1
Valid prediction for Augustus_model.g30435.t1
Valid prediction for GeneMark_model.79575_t
Valid prediction for GeneMark_model.79581_t
Valid prediction for snap_scaffold_19-snap.1757-T1
Valid prediction for snap_scaffold_19-snap.1756-T1
Valid prediction for GeneMark_model.79631_t
Valid prediction for GlimmerHMM_glimmerT_45602-T1
Valid prediction for GeneMark_model.79595_t
Valid prediction for GeneMark_model.79585_t
Valid prediction for snap_scaffold_19-snap.1741-T1
Valid prediction for GeneMark_model.79574_t
Valid prediction for Augustus_model.g30431.t1
Valid prediction for GeneMark_model.79619_t
Valid prediction for snap_scaffold_19-snap.1770-T1
Valid prediction for Augustus_model.g30428.t1
Valid prediction for GlimmerHMM_glimmerT_45606-T1
Valid prediction for CodingQuarry_transcript_25706-T1
Valid prediction for snap_scaffold_19-snap.1748-T1
Valid prediction for GeneMark_model.79591_t
Valid prediction for GeneMark_model.79599_t
Valid prediction for GeneMark_model.79601_t
Valid prediction for GeneMark_model.79617_t
Valid prediction for GeneMark_model.79596_t
Valid prediction for GeneMark_model.79615_t
Valid prediction for Augustus_model.g30420.t1
Valid prediction for snap_scaffold_19-snap.1775-T1
Valid prediction for snap_scaffold_19-snap.1773-T1
Valid prediction for GlimmerHMM_glimmerT_45605-T1
Valid prediction for Augustus_model.g30429.t1
Valid prediction for GeneMark_model.79625_t
Valid prediction for Augustus_model.g30426.t1
Valid prediction for snap_scaffold_19-snap.1740-T1
Valid prediction for GlimmerHMM_glimmerT_45610-T1
Valid prediction for snap_scaffold_19-snap.1758-T1
Valid prediction for Augustus_model.g30433.t1
Valid prediction for snap_scaffold_19-snap.1774-T1
Valid prediction for GeneMark_model.79628_t
Valid prediction for GeneMark_model.79587_t
Valid prediction for GeneMark_model.79571_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.79600_t
Valid prediction for Augustus_model.g30427.t1
Valid prediction for GlimmerHMM_glimmerT_45603-T1
Valid prediction for snap_scaffold_19-snap.1751-T1
Valid prediction for GlimmerHMM_glimmerT_45593-T1
Valid prediction for GeneMark_model.79610_t
Valid prediction for GeneMark_model.79608_t
Valid prediction for GeneMark_model.79606_t
Valid prediction for GeneMark_model.79629_t
Valid prediction for GeneMark_model.79626_t
Valid prediction for GeneMark_model.79620_t
Valid prediction for GeneMark_model.79602_t
Valid prediction for GeneMark_model.79586_t
Valid prediction for GlimmerHMM_glimmerT_45609-T1
Valid prediction for snap_scaffold_19-snap.1764-T1
Valid prediction for snap_scaffold_19-snap.1752-T1
Valid prediction for Augustus_model.g30430.t1
Valid prediction for Augustus_model.g30423.t1
Valid prediction for GlimmerHMM_glimmerT_45598-T1
Valid prediction for GeneMark_model.79612_t
Valid prediction for snap_scaffold_19-snap.1754-T1
Valid prediction for snap_scaffold_19-snap.1753-T1
Valid prediction for snap_scaffold_19-snap.1772-T1
Valid prediction for GeneMark_model.79579_t
Valid prediction for GeneMark_model.79592_t
Valid prediction for GeneMark_model.79580_t
Valid prediction for GlimmerHMM_glimmerT_45599-T1
Valid prediction for snap_scaffold_19-snap.1762-T1
Valid prediction for GeneMark_model.79573_t
Valid prediction for GeneMark_model.79598_t
Valid prediction for Augustus_model.g30419.t1
Valid prediction for snap_scaffold_19-snap.1746-T1
Valid prediction for GeneMark_model.79622_t
Valid prediction for snap_scaffold_19-snap.1766-T1
Valid prediction for snap_scaffold_19-snap.1769-T1
Valid prediction for GeneMark_model.79624_t
Valid prediction for snap_scaffold_19-snap.1743-T1
Valid prediction for GeneMark_model.79618_t
Valid prediction for GeneMark_model.79632_t
Valid prediction for GeneMark_model.79604_t
Valid prediction for GeneMark_model.79576_t
Valid prediction for GlimmerHMM_glimmerT_45600-T1
Valid prediction for GeneMark_model.79582_t
Valid prediction for snap_scaffold_19-snap.1750-T1
Valid prediction for GeneMark_model.79594_t
Valid prediction for Augustus_model.g30421.t1
Valid prediction for GeneMark_model.79584_t
Valid prediction for snap_scaffold_19-snap.1759-T1
Valid prediction for GlimmerHMM_glimmerT_45595-T1
Valid prediction for GeneMark_model.79614_t
Valid prediction for Augustus_model.g30432.t1
Valid prediction for snap_scaffold_19-snap.1755-T1
Valid prediction for Augustus_model.g30422.t1
Valid prediction for GeneMark_model.79588_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 24398, rend_intergenic: 19009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28032, rend_intergenic: 25868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36996, rend_intergenic: 28066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39241, rend_intergenic: 37595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73012, rend_intergenic: 58255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76148, rend_intergenic: 73632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78999, rend_intergenic: 76290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81788, rend_intergenic: 81407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98567, rend_intergenic: 85182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112382, rend_intergenic: 107910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116611, rend_intergenic: 112669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123391, rend_intergenic: 119175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141367, rend_intergenic: 130224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 149843
-exon list size: 648


building trellis

0.2    
0.3    
0.5    
0.6    
0.8    
0.9    
1.1    
1.2    
1.4    
1.5    
1.7    
1.8    
2.0    
2.2    
2.3    
2.5    
2.6    
2.8    
2.9    
3.1    
3.2    
3.4    
3.5    
3.7    
3.8    
4.0    
4.2    
4.3    
4.5    
4.6    
4.8    
4.9    
5.1    
5.2    
5.4    
5.5    
5.7    
5.8    
6.0    
6.2    
6.3    
6.5    
6.6    
6.8    
6.9    
7.1    
7.2    
7.4    
7.5    
7.7    
7.8    
8.0    
8.2    
8.3    
8.5    
8.6    
8.8    
8.9    
9.1    
9.2    
9.4    
9.5    
9.7    
9.8    
10.0    
10.2    
10.3    
10.5    
10.6    
10.8    
10.9    
11.1    
11.2    
11.4    
11.5    
11.7    
11.8    
12.0    
12.2    
12.3    
12.5    
12.6    
12.8    
12.9    
13.1    
13.2    
13.4    
13.5    
13.7    
13.8    
14.0    
14.2    
14.3    
14.5    
14.6    
14.8    
14.9    
15.1    
15.2    
15.4    
15.5    
15.7    
15.8    
16.0    
16.2    
16.3    
16.5    
16.6    
16.8    
16.9    
17.1    
17.2    
17.4    
17.5    
17.7    
17.8    
18.0    
18.2    
18.3    
18.5    
18.6    
18.8    
18.9    
19.1    
19.2    
19.4    
19.5    
19.7    
19.8    
20.0    
20.2    
20.3    
20.5    
20.6    
20.8    
20.9    
21.1    
21.2    
21.4    
21.5    
21.7    
21.8    
22.0    
22.2    
22.3    
22.5    
22.6    
22.8    
22.9    
23.1    
23.2    
23.4    
23.5    
23.7    
23.8    
24.0    
24.2    
24.3    
24.5    
24.6    
24.8    
24.9    
25.1    
25.2    
25.4    
25.5    
25.7    
25.8    
26.0    
26.2    
26.3    
26.5    
26.6    
26.8    
26.9    
27.1    
27.2    
27.4    
27.5    
27.7    
27.8    
28.0    
28.2    
28.3    
28.5    
28.6    
28.8    
28.9    
29.1    
29.2    
29.4    
29.5    
29.7    
29.8    
30.0    
30.2    
30.3    
30.5    
30.6    
30.8    
30.9    
31.1    
31.2    
31.4    
31.5    
31.7    
31.8    
32.0    
32.2    
32.3    
32.5    
32.6    
32.8    
32.9    
33.1    
33.2    
33.4    
33.5    
33.7    
33.8    
34.0    
34.2    
34.3    
34.5    
34.6    
34.8    
34.9    
35.1    
35.2    
35.4    
35.5    
35.7    
35.8    
36.0    
36.2    
36.3    
36.5    
36.6    
36.8    
36.9    
37.1    
37.2    
37.4    
37.5    
37.7    
37.8    
38.0    
38.2    
38.3    
38.5    
38.6    
38.8    
38.9    
39.1    
39.2    
39.4    
39.5    
39.7    
39.8    
40.0    
40.2    
40.3    
40.5    
40.6    
40.8    
40.9    
41.1    
41.2    
41.4    
41.5    
41.7    
41.8    
42.0    
42.2    
42.3    
42.5    
42.6    
42.8    
42.9    
43.1    
43.2    
43.4    
43.5    
43.7    
43.8    
44.0    
44.2    
44.3    
44.5    
44.6    
44.8    
44.9    
45.1    
45.2    
45.4    
45.5    
45.7    
45.8    
46.0    
46.2    
46.3    
46.5    
46.6    
46.8    
46.9    
47.1    
47.2    
47.4    
47.5    
47.7    
47.8    
48.0    
48.2    
48.3    
48.5    
48.6    
48.8    
48.9    
49.1    
49.2    
49.4    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.6    
50.8    
50.9    
51.1    
51.2    
51.4    
51.5    
51.7    
51.8    
52.0    
52.2    
52.3    
52.5    
52.6    
52.8    
52.9    
53.1    
53.2    
53.4    
53.5    
53.7    
53.8    
54.0    
54.2    
54.3    
54.5    
54.6    
54.8    
54.9    
55.1    
55.2    
55.4    
55.5    
55.7    
55.8    
56.0    
56.2    
56.3    
56.5    
56.6    
56.8    
56.9    
57.1    
57.2    
57.4    
57.5    
57.7    
57.8    
58.0    
58.2    
58.3    
58.5    
58.6    
58.8    
58.9    
59.1    
59.2    
59.4    
59.5    
59.7    
59.8    
60.0    
60.2    
60.3    
60.5    
60.6    
60.8    
60.9    
61.1    
61.2    
61.4    
61.5    
61.7    
61.8    
62.0    
62.2    
62.3    
62.5    
62.6    
62.8    
62.9    
63.1    
63.2    
63.4    
63.5    
63.7    
63.8    
64.0    
64.2    
64.3    
64.5    
64.6    
64.8    
64.9    
65.1    
65.2    
65.4    
65.5    
65.7    
65.8    
66.0    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.1    
67.2    
67.4    
67.5    
67.7    
67.8    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.4    
69.5    
69.7    
69.8    
70.0    
70.2    
70.3    
70.5    
70.6    
70.8    
70.9    
71.1    
71.2    
71.4    
71.5    
71.7    
71.8    
72.0    
72.2    
72.3    
72.5    
72.6    
72.8    
72.9    
73.1    
73.2    
73.4    
73.5    
73.7    
73.8    
74.0    
74.2    
74.3    
74.5    
74.6    
74.8    
74.9    
75.1    
75.2    
75.4    
75.5    
75.7    
75.8    
76.0    
76.2    
76.3    
76.5    
76.6    
76.8    
76.9    
77.1    
77.2    
77.4    
77.5    
77.7    
77.8    
78.0    
78.2    
78.3    
78.5    
78.6    
78.8    
78.9    
79.1    
79.2    
79.4    
79.5    
79.7    
79.8    
80.0    
80.2    
80.3    
80.5    
80.6    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.8    
82.0    
82.2    
82.3    
82.5    
82.6    
82.8    
82.9    
83.1    
83.2    
83.4    
83.5    
83.7    
83.8    
84.0    
84.2    
84.3    
84.5    
84.6    
84.8    
84.9    
85.1    
85.2    
85.4    
85.5    
85.7    
85.8    
86.0    
86.2    
86.3    
86.5    
86.6    
86.8    
86.9    
87.1    
87.2    
87.4    
87.5    
87.7    
87.8    
88.0    
88.2    
88.3    
88.5    
88.6    
88.8    
88.9    
89.1    
89.2    
89.4    
89.5    
89.7    
89.8    
90.0    
90.2    
90.3    
90.5    
90.6    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.8    
92.0    
92.2    
92.3    
92.5    
92.6    
92.8    
92.9    
93.1    
93.2    
93.4    
93.5    
93.7    
93.8    
94.0    
94.2    
94.3    
94.5    
94.6    
94.8    
94.9    
95.1    
95.2    
95.4    
95.5    
95.7    
95.8    
96.0    
96.2    
96.3    
96.5    
96.6    
96.8    
96.9    
97.1    
97.2    
97.4    
97.5    
97.7    
97.8    
98.0    
98.2    
98.3    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 24398, rend_intergenic: 19009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28032, rend_intergenic: 25868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36996, rend_intergenic: 28066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39241, rend_intergenic: 37595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73012, rend_intergenic: 58255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76148, rend_intergenic: 73632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78999, rend_intergenic: 76290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81788, rend_intergenic: 81407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98567, rend_intergenic: 85182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112382, rend_intergenic: 107910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116611, rend_intergenic: 112669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123391, rend_intergenic: 119175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141367, rend_intergenic: 130224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support