-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_8794954-8951563 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.79547_t Valid prediction for GlimmerHMM_glimmerT_45566-T1 Valid prediction for GeneMark_model.79549_t Valid prediction for pasa_asmbl_22368.p1 Valid prediction for pasa_asmbl_22362.p1 Valid prediction for GeneMark_model.79552_t Valid prediction for CodingQuarry_transcript_25698-T1 Valid prediction for GeneMark_model.79535_t Valid prediction for snap_scaffold_19-snap.1704-T1 Valid prediction for GlimmerHMM_glimmerT_45576-T1 Valid prediction for GlimmerHMM_glimmerT_45575-T1 Valid prediction for snap_scaffold_19-snap.1718-T1 Valid prediction for GlimmerHMM_glimmerT_45567-T1 Valid prediction for GeneMark_model.79563_t Valid prediction for Augustus_model.g30409.t1 Valid prediction for GlimmerHMM_glimmerT_45580-T1 Valid prediction for Augustus_model.g30406.t1 Valid prediction for Augustus_model.g30403.t1 Valid prediction for GeneMark_model.79561_t Valid prediction for snap_scaffold_19-snap.1712-T1 Valid prediction for GeneMark_model.79546_t Valid prediction for CodingQuarry_transcript_25694-T1 Valid prediction for GlimmerHMM_glimmerT_45590-T1 Valid prediction for snap_scaffold_19-snap.1719-T1 Valid prediction for GeneMark_model.79556_t Valid prediction for GlimmerHMM_glimmerT_45591-T1 Couldn't classify 2054, 2171 Couldn't classify 2864, 3070 Sorry, prediction pasa_asmbl_22355.p1 fails validation. (TTC) GA 2054-2171 GT AGG (GTG) AG 2664-2746 GT ATG (ATG) AG 2864-3070 GG CCG -recovered pasa_asmbl_22355.p1, internal, 2664, 2746 Valid prediction for CodingQuarry_transcript_25705-T1 Valid prediction for GeneMark_model.79540_t Valid prediction for GlimmerHMM_glimmerT_45582-T1 Valid prediction for Augustus_model.g30401.t1 Valid prediction for GlimmerHMM_glimmerT_45572-T1 Valid prediction for snap_scaffold_19-snap.1725-T1 Valid prediction for pasa_asmbl_22367.p1 Couldn't classify 90557, 90971 Couldn't classify 92244, 92445 Sorry, prediction pasa_asmbl_22370.p1 fails validation. (GTA) TC 90557-90971 GT TGG (GGA) AG 91137-91331 GT AGG (GCA) AG 91502-91656 GT AGG (GTT) AG 91815-91897 GT AGG (AAA) AG 92244-92445 AA CCA -recovered pasa_asmbl_22370.p1, internal, 91137, 91331 -recovered pasa_asmbl_22370.p1, internal, 91502, 91656 -recovered pasa_asmbl_22370.p1, internal, 91815, 91897 Valid prediction for snap_scaffold_19-snap.1706-T1 Valid prediction for HiQ_model.g30396.t1 Valid prediction for GlimmerHMM_glimmerT_45587-T1 Couldn't classify 21617, 21641 Sorry, prediction pasa_asmbl_22363.p1 fails validation. (GTT) AT 21617-21641 GT TTG (ATG) AG 21795-21916 GT AGG (GCT) AG 23185-23303 GT GGG (GTT) AG 24137-24326 GT AGG (ATC) AG 24596-24760 GT AGG (GTG) AG 24908-25076 GT TGG (AGA) AG 25198-25337 GT AGG (TTT) AG 25445-25646 GT TGG (ACG) AG 25858-26009 CC GAC add_exon() Sorry, pasa_asmbl_22363.p1 21795-21916-initial-1 is invalid. -recovered pasa_asmbl_22363.p1, initial, 21795, 21916 -recovered pasa_asmbl_22363.p1, terminal, 25858, 26009 -recovered pasa_asmbl_22363.p1, internal, 21795, 21916 -recovered pasa_asmbl_22363.p1, internal, 23185, 23303 -recovered pasa_asmbl_22363.p1, internal, 24137, 24326 -recovered pasa_asmbl_22363.p1, internal, 24596, 24760 -recovered pasa_asmbl_22363.p1, internal, 24908, 25076 -recovered pasa_asmbl_22363.p1, internal, 25198, 25337 -recovered pasa_asmbl_22363.p1, internal, 25445, 25646 Valid prediction for snap_scaffold_19-snap.1723-T1 Valid prediction for Augustus_model.g30395.t1 Valid prediction for GlimmerHMM_glimmerT_45568-T1 Valid prediction for CodingQuarry_transcript_25699-T1 Valid prediction for GeneMark_model.79542_t Valid prediction for Augustus_model.g30416.t1 Valid prediction for Augustus_model.g30412.t1 Valid prediction for GeneMark_model.79534_t Valid prediction for GeneMark_model.79553_t Valid prediction for snap_scaffold_19-snap.1716-T1 Valid prediction for HiQ_model.g30397.t1 Valid prediction for GeneMark_model.79550_t Valid prediction for Augustus_model.g30405.t1 Valid prediction for GeneMark_model.79558_t Valid prediction for CodingQuarry_transcript_25695-T1 Couldn't classify 17454, 17491 Couldn't classify 19215, 19215 Sorry, prediction CodingQuarry_transcript_25696-T1 fails validation. (ATG) AC 14534-14609 GT CTG (TTA) AG 14789-14949 GT CCG (TTT) AT 17454-17491 GT AGG (TGT) AG 17621-17683 GT TAG (ACA) AG 19215-19215 CA GAC -recovered CodingQuarry_transcript_25696-T1, initial, 14534, 14609 -recovered CodingQuarry_transcript_25696-T1, internal, 14789, 14949 -recovered CodingQuarry_transcript_25696-T1, internal, 17621, 17683 Valid prediction for snap_scaffold_19-snap.1728-T1 Valid prediction for GlimmerHMM_glimmerT_45577-T1 Valid prediction for GeneMark_model.79539_t Valid prediction for GlimmerHMM_glimmerT_45585-T1 Valid prediction for HiQ_model.g30411.t1 Valid prediction for snap_scaffold_19-snap.1739-T1 Valid prediction for snap_scaffold_19-snap.1734-T1 Couldn't classify 10205, 10368 Sorry, prediction pasa_asmbl_22357.p1 fails validation. (ATG) CT 6976-7054 GT ATG (TTC) AG 7798-7955 GT CGG (GAT) AG 8461-8485 GT TGG (TGT) AG 8575-8661 GT AGG (AGA) AG 9036-9158 GT TGG (ATA) AG 9406-9531 GT AGG (ACA) AG 10205-10368 CA ACC -recovered pasa_asmbl_22357.p1, initial, 6976, 7054 -recovered pasa_asmbl_22357.p1, internal, 7798, 7955 -recovered pasa_asmbl_22357.p1, internal, 8461, 8485 -recovered pasa_asmbl_22357.p1, internal, 8575, 8661 -recovered pasa_asmbl_22357.p1, internal, 9036, 9158 -recovered pasa_asmbl_22357.p1, internal, 9406, 9531 Valid prediction for snap_scaffold_19-snap.1731-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.79537_t Valid prediction for GlimmerHMM_glimmerT_45574-T1 Valid prediction for GlimmerHMM_glimmerT_45589-T1 Valid prediction for GeneMark_model.79543_t Valid prediction for snap_scaffold_19-snap.1714-T1 Valid prediction for GeneMark_model.79545_t Valid prediction for GeneMark_model.79565_t Valid prediction for GeneMark_model.79569_t Valid prediction for Augustus_model.g30415.t1 Valid prediction for GlimmerHMM_glimmerT_45583-T1 Couldn't classify 92909, 93055 Sorry, prediction pasa_asmbl_22733.p1 fails validation. (CAG) GT 92909-93055 GT GGG (GTA) AG 93169-93315 GT AGG (AAG) AG 93453-93615 GT GGG (GTA) AG 93887-94338 GT GGG (CTG) AG 94493-94681 GC GAG -recovered pasa_asmbl_22733.p1, terminal, 94493, 94681 -recovered pasa_asmbl_22733.p1, internal, 93169, 93315 -recovered pasa_asmbl_22733.p1, internal, 93453, 93615 -recovered pasa_asmbl_22733.p1, internal, 93887, 94338 -recovered pasa_asmbl_22733.p1, internal, 94493, 94681 Valid prediction for pasa_asmbl_22371.p1 Valid prediction for snap_scaffold_19-snap.1735-T1 Valid prediction for snap_scaffold_19-snap.1715-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.79567_t Couldn't classify 9178, 9331 Couldn't classify 10070, 10383 Sorry, prediction pasa_asmbl_21531.p1 fails validation. (CTT) CC 9178-9331 GT AGG (AGT) AG 10070-10383 TC CCT Valid prediction for GeneMark_model.79554_t Valid prediction for snap_scaffold_19-snap.1721-T1 Valid prediction for GlimmerHMM_glimmerT_45578-T1 Valid prediction for snap_scaffold_19-snap.1710-T1 Valid prediction for GeneMark_model.79564_t Valid prediction for GeneMark_model.79557_t Valid prediction for pasa_asmbl_21522.p1 Valid prediction for Augustus_model.g30399.t1 Valid prediction for GlimmerHMM_glimmerT_45581-T1 Couldn't classify 69303, 69407 Couldn't classify 69836, 69904 Sorry, prediction CodingQuarry_transcript_25701-T1 fails validation. (ATG) TA 68124-68265 GT AGG (ACA) AG 68764-68879 GT AGG (GCT) AG 69303-69407 TA AAT (GAG) CA 69836-69904 GT CTG (ATC) AG 69994-70067 GT TGG (GGA) AG 70229-70391 GT AGG (GTG) AG 70601-70690 GT ACG (GTC) AG 70772-70854 GT CAG (GAA) AG 71008-71075 GT AGG (GTC) AG 71197-71315 GT AGG (AGT) AG 71473-71665 GT AGG (CTA) AG 71778-71882 GT CGG (GTA) AG 72003-72113 GT TGG (AGT) AG 72474-72559 GT AGG (TAC) AG 72798-72905 GT AGG (ATG) AG 73057-73170 GT AGG (GGT) AG 73296-73401 GT AGG (AGG) AG 73492-73664 GT CGG (GTG) AG 73759-73911 GT AGG (CCG) AG 74120-74215 GG GAG -recovered CodingQuarry_transcript_25701-T1, initial, 68124, 68265 -recovered CodingQuarry_transcript_25701-T1, initial, 73057, 73170 add_exon() Sorry, CodingQuarry_transcript_25701-T1 71473-71665-terminal-3 is invalid. -recovered CodingQuarry_transcript_25701-T1, terminal, 71473, 71665 -recovered CodingQuarry_transcript_25701-T1, terminal, 73296, 73401 -recovered CodingQuarry_transcript_25701-T1, terminal, 74120, 74215 -recovered CodingQuarry_transcript_25701-T1, internal, 68764, 68879 -recovered CodingQuarry_transcript_25701-T1, internal, 69994, 70067 -recovered CodingQuarry_transcript_25701-T1, internal, 70229, 70391 -recovered CodingQuarry_transcript_25701-T1, internal, 70601, 70690 -recovered CodingQuarry_transcript_25701-T1, internal, 70772, 70854 -recovered CodingQuarry_transcript_25701-T1, internal, 71008, 71075 -recovered CodingQuarry_transcript_25701-T1, internal, 71197, 71315 -recovered CodingQuarry_transcript_25701-T1, internal, 71473, 71665 -recovered CodingQuarry_transcript_25701-T1, internal, 71778, 71882 -recovered CodingQuarry_transcript_25701-T1, internal, 72003, 72113 -recovered CodingQuarry_transcript_25701-T1, internal, 72474, 72559 -recovered CodingQuarry_transcript_25701-T1, internal, 72798, 72905 -recovered CodingQuarry_transcript_25701-T1, internal, 73057, 73170 -recovered CodingQuarry_transcript_25701-T1, internal, 73296, 73401 -recovered CodingQuarry_transcript_25701-T1, internal, 73492, 73664 -recovered CodingQuarry_transcript_25701-T1, internal, 73759, 73911 Valid prediction for Augustus_model.g30414.t1 Valid prediction for GlimmerHMM_glimmerT_45569-T1 Valid prediction for GlimmerHMM_glimmerT_45573-T1 Valid prediction for GeneMark_model.79551_t Valid prediction for snap_scaffold_19-snap.1727-T1 Couldn't classify 69303, 69407 Couldn't classify 69836, 69904 Sorry, prediction CodingQuarry_transcript_25702-T1 fails validation. (ATG) TA 68124-68265 GT AGG (ACA) AG 68764-68879 GT AGG (GCT) AG 69303-69407 TA AAT (GAG) CA 69836-69904 GT CTG (ATC) AG 69994-70067 GT TGG (GGA) AG 70229-70391 GT AGG (GTG) AG 70601-70690 GT ACG (GTC) AG 70772-70854 GT CAG (GAA) AG 71008-71075 GT AGG (GTC) AG 71197-71315 GT AGG (AGT) AG 71473-71665 GT AGG (CTA) AG 71778-71882 GT CGG (GTA) AG 72003-72113 GT TGG (AGT) AG 72474-72559 GT AGG (TAC) AG 72798-72905 GT AGG (ATG) AG 73057-73170 GT AGG (GGT) AG 73296-73401 GT AGG (AGG) AG 73492-73668 GT AGG (GTG) AG 73759-73911 GT AGG (CCG) AG 74120-74145 GT GAG -recovered CodingQuarry_transcript_25702-T1, initial, 68124, 68265 -recovered CodingQuarry_transcript_25702-T1, initial, 73057, 73170 add_exon() Sorry, CodingQuarry_transcript_25702-T1 71473-71665-terminal-3 is invalid. -recovered CodingQuarry_transcript_25702-T1, terminal, 71473, 71665 -recovered CodingQuarry_transcript_25702-T1, terminal, 73296, 73401 add_exon() Sorry, CodingQuarry_transcript_25702-T1 73492-73668-terminal-1 is invalid. -recovered CodingQuarry_transcript_25702-T1, terminal, 73492, 73668 -recovered CodingQuarry_transcript_25702-T1, terminal, 74120, 74145 -recovered CodingQuarry_transcript_25702-T1, internal, 68764, 68879 -recovered CodingQuarry_transcript_25702-T1, internal, 69994, 70067 -recovered CodingQuarry_transcript_25702-T1, internal, 70229, 70391 -recovered CodingQuarry_transcript_25702-T1, internal, 70601, 70690 -recovered CodingQuarry_transcript_25702-T1, internal, 70772, 70854 -recovered CodingQuarry_transcript_25702-T1, internal, 71008, 71075 -recovered CodingQuarry_transcript_25702-T1, internal, 71197, 71315 -recovered CodingQuarry_transcript_25702-T1, internal, 71473, 71665 -recovered CodingQuarry_transcript_25702-T1, internal, 71778, 71882 -recovered CodingQuarry_transcript_25702-T1, internal, 72003, 72113 -recovered CodingQuarry_transcript_25702-T1, internal, 72474, 72559 -recovered CodingQuarry_transcript_25702-T1, internal, 72798, 72905 -recovered CodingQuarry_transcript_25702-T1, internal, 73057, 73170 -recovered CodingQuarry_transcript_25702-T1, internal, 73296, 73401 -recovered CodingQuarry_transcript_25702-T1, internal, 73492, 73668 -recovered CodingQuarry_transcript_25702-T1, internal, 73759, 73911 -recovered CodingQuarry_transcript_25702-T1, internal, 74120, 74145 Couldn't classify 104678, 104821 Couldn't classify 106105, 106161 Sorry, prediction pasa_asmbl_21521.p1 fails validation. (CAT) CT 104678-104821 GT AGG (ATC) AG 105009-105176 GT AGG (GAA) AG 105740-105919 GT AGG (ATG) AG 106105-106161 GG GAG -recovered pasa_asmbl_21521.p1, internal, 105009, 105176 -recovered pasa_asmbl_21521.p1, internal, 105740, 105919 Valid prediction for Augustus_model.g30404.t1 Valid prediction for snap_scaffold_19-snap.1730-T1 Valid prediction for GlimmerHMM_glimmerT_45584-T1 Valid prediction for Augustus_model.g30402.t1 Valid prediction for snap_scaffold_19-snap.1707-T1 Valid prediction for GlimmerHMM_glimmerT_45571-T1 Valid prediction for snap_scaffold_19-snap.1733-T1 Valid prediction for GeneMark_model.79541_t Valid prediction for GeneMark_model.79555_t Valid prediction for snap_scaffold_19-snap.1713-T1 Valid prediction for CodingQuarry_transcript_25700-T1 Couldn't classify 57796, 57821 Sorry, prediction pasa_asmbl_21527.p1 fails validation. (GAA) GT 57796-57821 GT AGG (TGA) AG 58404-58475 GT AGG (GTG) AG 58752-58863 GT AGG (TGC) AG 59052-59154 GT AGG (ACA) AG 59309-59355 CT AAC -recovered pasa_asmbl_21527.p1, terminal, 59309, 59355 -recovered pasa_asmbl_21527.p1, internal, 58404, 58475 -recovered pasa_asmbl_21527.p1, internal, 58752, 58863 -recovered pasa_asmbl_21527.p1, internal, 59052, 59154 Valid prediction for snap_scaffold_19-snap.1724-T1 Valid prediction for snap_scaffold_19-snap.1705-T1 Valid prediction for GlimmerHMM_glimmerT_45579-T1 Valid prediction for GeneMark_model.79560_t Valid prediction for snap_scaffold_19-snap.1708-T1 Valid prediction for GeneMark_model.79562_t Valid prediction for GeneMark_model.79559_t Valid prediction for GeneMark_model.79548_t Valid prediction for GeneMark_model.79568_t Valid prediction for Augustus_model.g30410.t1 Valid prediction for GeneMark_model.79566_t Couldn't classify 69303, 69407 Couldn't classify 69836, 69904 Sorry, prediction CodingQuarry_transcript_25703-T1 fails validation. (ATG) TA 68124-68265 GT AGG (ACA) AG 68764-68879 GT AGG (GCT) AG 69303-69407 TA AAT (GAG) CA 69836-69904 GT CTG (ATC) AG 69994-70067 GT TGG (GGA) AG 70229-70391 GT AGG (GTG) AG 70601-70690 GT ACG (GTC) AG 70772-70854 GT CAG (GAA) AG 71008-71075 GT AGG (GTC) AG 71197-71315 GT AGG (AGT) AG 71473-71665 GT AGG (CTA) AG 71778-71882 GT CGG (GTA) AG 72003-72113 GT TGG (AGT) AG 72474-72559 GT AGG (TAC) AG 72798-72905 GT AGG (ATG) AG 73057-73170 GT AGG (GGT) AG 73296-73401 GT AGG (CTG) AG 73470-73636 GA AAG -recovered CodingQuarry_transcript_25703-T1, initial, 68124, 68265 -recovered CodingQuarry_transcript_25703-T1, initial, 73057, 73170 add_exon() Sorry, CodingQuarry_transcript_25703-T1 71473-71665-terminal-3 is invalid. -recovered CodingQuarry_transcript_25703-T1, terminal, 71473, 71665 -recovered CodingQuarry_transcript_25703-T1, terminal, 73296, 73401 -recovered CodingQuarry_transcript_25703-T1, terminal, 73470, 73636 -recovered CodingQuarry_transcript_25703-T1, internal, 68764, 68879 -recovered CodingQuarry_transcript_25703-T1, internal, 69994, 70067 -recovered CodingQuarry_transcript_25703-T1, internal, 70229, 70391 -recovered CodingQuarry_transcript_25703-T1, internal, 70601, 70690 -recovered CodingQuarry_transcript_25703-T1, internal, 70772, 70854 -recovered CodingQuarry_transcript_25703-T1, internal, 71008, 71075 -recovered CodingQuarry_transcript_25703-T1, internal, 71197, 71315 -recovered CodingQuarry_transcript_25703-T1, internal, 71473, 71665 -recovered CodingQuarry_transcript_25703-T1, internal, 71778, 71882 -recovered CodingQuarry_transcript_25703-T1, internal, 72003, 72113 -recovered CodingQuarry_transcript_25703-T1, internal, 72474, 72559 -recovered CodingQuarry_transcript_25703-T1, internal, 72798, 72905 -recovered CodingQuarry_transcript_25703-T1, internal, 73057, 73170 -recovered CodingQuarry_transcript_25703-T1, internal, 73296, 73401 Valid prediction for GeneMark_model.79544_t Couldn't classify 57136, 57137 Sorry, prediction CodingQuarry_transcript_25704-T1 fails validation. (ATG) AA 57136-57137 GT ATG (GTG) AG 58752-58863 GT AGG (TGC) AG 59052-59154 GT AGG (ACA) AG 59309-59355 CT AAC -recovered CodingQuarry_transcript_25704-T1, terminal, 59309, 59355 -recovered CodingQuarry_transcript_25704-T1, internal, 58752, 58863 -recovered CodingQuarry_transcript_25704-T1, internal, 59052, 59154 Valid prediction for snap_scaffold_19-snap.1726-T1 Valid prediction for GlimmerHMM_glimmerT_45570-T1 Valid prediction for Augustus_model.g30400.t1 Couldn't classify 117539, 117559 Sorry, prediction pasa_asmbl_21519.p1 fails validation. (TTC) CC 117539-117559 GT AGG (GTG) AG 117943-118144 GT AGG (GGA) AG 118300-118592 AG AAA -recovered pasa_asmbl_21519.p1, terminal, 118300, 118592 -recovered pasa_asmbl_21519.p1, internal, 117943, 118144 Valid prediction for snap_scaffold_19-snap.1720-T1 Valid prediction for Augustus_model.g30413.t1 Valid prediction for GeneMark_model.79538_t Valid prediction for snap_scaffold_19-snap.1736-T1 Valid prediction for snap_scaffold_19-snap.1711-T1 Valid prediction for Augustus_model.g30407.t1 Valid prediction for HiQ_model.g30408.t1 Couldn't classify 69303, 69406 Couldn't classify 69835, 69904 Sorry, prediction pasa_asmbl_21903.p1 fails validation. (ATG) TA 68124-68265 GT AGG (ACA) AG 68764-68879 GT AGG (GCT) AG 69303-69406 AT GAA (AGA) AC 69835-69904 GT CTG (ATC) AG 69994-70067 GT TGG (GGA) AG 70229-70391 GT AGG (GTG) AG 70601-70690 GT ACG (GTC) AG 70772-70854 GT CAG (GAA) AG 71008-71075 GT AGG (GTC) AG 71197-71315 GT AGG (AGT) AG 71473-71665 GT AGG (CTA) AG 71778-71882 GT CGG (GTA) AG 72003-72113 GT TGG (AGT) AG 72474-72559 GT AGG (TAC) AG 72798-72905 GT AGG (ATG) AG 73057-73170 GT AGG (GGT) AG 73296-73401 GT AGG (AGG) AG 73492-73664 GT CGG (GTG) AG 73759-73911 GT AGG (CCG) AG 74120-74215 GG GAG -recovered pasa_asmbl_21903.p1, initial, 68124, 68265 -recovered pasa_asmbl_21903.p1, initial, 73057, 73170 add_exon() Sorry, pasa_asmbl_21903.p1 71473-71665-terminal-3 is invalid. -recovered pasa_asmbl_21903.p1, terminal, 71473, 71665 -recovered pasa_asmbl_21903.p1, terminal, 73296, 73401 -recovered pasa_asmbl_21903.p1, terminal, 74120, 74215 -recovered pasa_asmbl_21903.p1, internal, 68764, 68879 -recovered pasa_asmbl_21903.p1, internal, 69994, 70067 -recovered pasa_asmbl_21903.p1, internal, 70229, 70391 -recovered pasa_asmbl_21903.p1, internal, 70601, 70690 -recovered pasa_asmbl_21903.p1, internal, 70772, 70854 -recovered pasa_asmbl_21903.p1, internal, 71008, 71075 -recovered pasa_asmbl_21903.p1, internal, 71197, 71315 -recovered pasa_asmbl_21903.p1, internal, 71473, 71665 -recovered pasa_asmbl_21903.p1, internal, 71778, 71882 -recovered pasa_asmbl_21903.p1, internal, 72003, 72113 -recovered pasa_asmbl_21903.p1, internal, 72474, 72559 -recovered pasa_asmbl_21903.p1, internal, 72798, 72905 -recovered pasa_asmbl_21903.p1, internal, 73057, 73170 -recovered pasa_asmbl_21903.p1, internal, 73296, 73401 -recovered pasa_asmbl_21903.p1, internal, 73492, 73664 -recovered pasa_asmbl_21903.p1, internal, 73759, 73911 Valid prediction for snap_scaffold_19-snap.1737-T1 Valid prediction for snap_scaffold_19-snap.1729-T1 Valid prediction for snap_scaffold_19-snap.1709-T1 Valid prediction for GeneMark_model.79570_t Valid prediction for Augustus_model.g30417.t1 Valid prediction for GlimmerHMM_glimmerT_45588-T1 Valid prediction for GlimmerHMM_glimmerT_45586-T1 Valid prediction for snap_scaffold_19-snap.1717-T1 Valid prediction for GlimmerHMM_glimmerT_45592-T1 Valid prediction for Augustus_model.g30398.t1 Valid prediction for snap_scaffold_19-snap.1732-T1 Valid prediction for GeneMark_model.79536_t Valid prediction for snap_scaffold_19-snap.1722-T1 Valid prediction for Augustus_model.g30418.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13515, rend_intergenic: 10544 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 17239, rend_intergenic: 14534 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26135, rend_intergenic: 17679 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46689, rend_intergenic: 43239 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52415, rend_intergenic: 48785 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73994, rend_intergenic: 71121 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130465, rend_intergenic: 129033 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139213, rend_intergenic: 131808 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 156610 -exon list size: 605 building trellis 0.2 0.3 0.5 0.7 0.8 1.0 1.2 1.3 1.5 1.6 1.8 2.0 2.1 2.3 2.5 2.6 2.8 3.0 3.1 3.3 3.5 3.6 3.8 4.0 4.1 4.3 4.4 4.6 4.8 4.9 5.1 5.3 5.4 5.6 5.8 5.9 6.1 6.3 6.4 6.6 6.8 6.9 7.1 7.2 7.4 7.6 7.7 7.9 8.1 8.2 8.4 8.6 8.7 8.9 9.1 9.2 9.4 9.6 9.7 9.9 10.0 10.2 10.4 10.5 10.7 10.9 11.0 11.2 11.4 11.5 11.7 11.9 12.0 12.2 12.4 12.5 12.7 12.9 13.0 13.2 13.3 13.5 13.7 13.8 14.0 14.2 14.3 14.5 14.7 14.8 15.0 15.2 15.3 15.5 15.7 15.8 16.0 16.1 16.3 16.5 16.6 16.8 17.0 17.1 17.3 17.5 17.6 17.8 18.0 18.1 18.3 18.5 18.6 18.8 18.9 19.1 19.3 19.4 19.6 19.8 19.9 20.1 20.3 20.4 20.6 20.8 20.9 21.1 21.3 21.4 21.6 21.7 21.9 22.1 22.2 22.4 22.6 22.7 22.9 23.1 23.2 23.4 23.6 23.7 23.9 24.1 24.2 24.4 24.5 24.7 24.9 25.0 25.2 25.4 25.5 25.7 25.9 26.0 26.2 26.4 26.5 26.7 26.9 27.0 27.2 27.3 27.5 27.7 27.8 28.0 28.2 28.3 28.5 28.7 28.8 29.0 29.2 29.3 29.5 29.7 29.8 30.0 30.1 30.3 30.5 30.6 30.8 31.0 31.1 31.3 31.5 31.6 31.8 32.0 32.1 32.3 32.5 32.6 32.8 32.9 33.1 33.3 33.4 33.6 33.8 33.9 34.1 34.3 34.4 34.6 34.8 34.9 35.1 35.3 35.4 35.6 35.7 35.9 36.1 36.2 36.4 36.6 36.7 36.9 37.1 37.2 37.4 37.6 37.7 37.9 38.1 38.2 38.4 38.6 38.7 38.9 39.0 39.2 39.4 39.5 39.7 39.9 40.0 40.2 40.4 40.5 40.7 40.9 41.0 41.2 41.4 41.5 41.7 41.8 42.0 42.2 42.3 42.5 42.7 42.8 43.0 43.2 43.3 43.5 43.7 43.8 44.0 44.2 44.3 44.5 44.6 44.8 45.0 45.1 45.3 45.5 45.6 45.8 46.0 46.1 46.3 46.5 46.6 46.8 47.0 47.1 47.3 47.4 47.6 47.8 47.9 48.1 48.3 48.4 48.6 48.8 48.9 49.1 49.3 49.4 49.6 49.8 49.9 50.1 50.2 50.4 50.6 50.7 50.9 51.1 51.2 51.4 51.6 51.7 51.9 52.1 52.2 52.4 52.6 52.7 52.9 53.0 53.2 53.4 53.5 53.7 53.9 54.0 54.2 54.4 54.5 54.7 54.9 55.0 55.2 55.4 55.5 55.7 55.8 56.0 56.2 56.3 56.5 56.7 56.8 57.0 57.2 57.3 57.5 57.7 57.8 58.0 58.2 58.3 58.5 58.6 58.8 59.0 59.1 59.3 59.5 59.6 59.8 60.0 60.1 60.3 60.5 60.6 60.8 61.0 61.1 61.3 61.4 61.6 61.8 61.9 62.1 62.3 62.4 62.6 62.8 62.9 63.1 63.3 63.4 63.6 63.8 63.9 64.1 64.3 64.4 64.6 64.7 64.9 65.1 65.2 65.4 65.6 65.7 65.9 66.1 66.2 66.4 66.6 66.7 66.9 67.1 67.2 67.4 67.5 67.7 67.9 68.0 68.2 68.4 68.5 68.7 68.9 69.0 69.2 69.4 69.5 69.7 69.9 70.0 70.2 70.3 70.5 70.7 70.8 71.0 71.2 71.3 71.5 71.7 71.8 72.0 72.2 72.3 72.5 72.7 72.8 73.0 73.1 73.3 73.5 73.6 73.8 74.0 74.1 74.3 74.5 74.6 74.8 75.0 75.1 75.3 75.5 75.6 75.8 75.9 76.1 76.3 76.4 76.6 76.8 76.9 77.1 77.3 77.4 77.6 77.8 77.9 78.1 78.3 78.4 78.6 78.7 78.9 79.1 79.2 79.4 79.6 79.7 79.9 80.1 80.2 80.4 80.6 80.7 80.9 81.1 81.2 81.4 81.5 81.7 81.9 82.0 82.2 82.4 82.5 82.7 82.9 83.0 83.2 83.4 83.5 83.7 83.9 84.0 84.2 84.3 84.5 84.7 84.8 85.0 85.2 85.3 85.5 85.7 85.8 86.0 86.2 86.3 86.5 86.7 86.8 87.0 87.1 87.3 87.5 87.6 87.8 88.0 88.1 88.3 88.5 88.6 88.8 89.0 89.1 89.3 89.5 89.6 89.8 90.0 90.1 90.3 90.4 90.6 90.8 90.9 91.1 91.3 91.4 91.6 91.8 91.9 92.1 92.3 92.4 92.6 92.8 92.9 93.1 93.2 93.4 93.6 93.7 93.9 94.1 94.2 94.4 94.6 94.7 94.9 95.1 95.2 95.4 95.6 95.7 95.9 96.0 96.2 96.4 96.5 96.7 96.9 97.0 97.2 97.4 97.5 97.7 97.9 98.0 98.2 98.4 98.5 98.7 98.8 99.0 99.2 99.3 99.5 99.7 99.8 -found 28 predictions from path traversal Error with prediction: snap lend_intergenic: 13515, rend_intergenic: 10544 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 17239, rend_intergenic: 14534 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26135, rend_intergenic: 17679 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46689, rend_intergenic: 43239 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52415, rend_intergenic: 48785 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73994, rend_intergenic: 71121 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130465, rend_intergenic: 129033 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139213, rend_intergenic: 131808 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 24 predictions persist after filtering for low support