-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_8160029-8369350

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.79424_t
Valid prediction for GeneMark_model.79444_t
Valid prediction for snap_scaffold_19-snap.1630-T1
Valid prediction for snap_scaffold_19-snap.1595-T1
Valid prediction for snap_scaffold_19-snap.1608-T1
Valid prediction for CodingQuarry_transcript_25675-T1
Couldn't classify 69434, 69643
Sorry, prediction pasa_asmbl_22305.p1 fails validation.
(CCC)	 AG	69434-69643	GT	TGG
(GTC)	 AG	69826-69874	GT	AGG
(GTT)	 AG	70150-70346	GT	ACG
(CAC)	 AG	70500-70588	GT	AAG
(GGT)	 AG	70672-70786	CT	GAC
-recovered pasa_asmbl_22305.p1, terminal, 70672, 70786
-recovered pasa_asmbl_22305.p1, internal, 69434, 69643
-recovered pasa_asmbl_22305.p1, internal, 69826, 69874
-recovered pasa_asmbl_22305.p1, internal, 70150, 70346
-recovered pasa_asmbl_22305.p1, internal, 70500, 70588
Valid prediction for CodingQuarry_transcript_25680-T1
Valid prediction for GlimmerHMM_glimmerT_45498-T1
Valid prediction for GlimmerHMM_glimmerT_45513-T1
Valid prediction for snap_scaffold_19-snap.1616-T1
Valid prediction for GlimmerHMM_glimmerT_45506-T1
Valid prediction for GlimmerHMM_glimmerT_45500-T1
Valid prediction for Augustus_model.g30348.t1
Valid prediction for pasa_asmbl_22307.p1
Couldn't classify 41702, 41767
Couldn't classify 41861, 41902
Sorry, prediction pasa_asmbl_22743.p1 fails validation.
(ATG)	 CC	41079-41114	GT	AGG
(ATT)	 AG	41280-41369	GT	AGG
(CTG)	 AG	41513-41586	GT	AGG
(GTG)	 AG	41702-41767	AT	CAA
(ATC)	 AC	41861-41902	GT	TGG
(GGC)	 AG	42019-42073	GT	ATG
(GCA)	 AG	42206-42309	GT	AAG
(TCG)	 AG	42882-42957	GT	AGG
(ATC)	 AG	43231-43372	GC	AGG
(CGG)	 AG	43490-43590	GT	TGG
(GGT)	 AG	43755-43828	GT	AGG
(CGA)	 AG	44112-44237	GT	GTG
(GTA)	 AG	44409-44532	GT	TGG
(GGT)	 AG	44638-44727	CG	AGC
-recovered pasa_asmbl_22743.p1, initial, 41079, 41114
add_exon() Sorry, pasa_asmbl_22743.p1 41513-41586-terminal-2 is invalid.
-recovered pasa_asmbl_22743.p1, terminal, 41513, 41586
-recovered pasa_asmbl_22743.p1, terminal, 44638, 44727
-recovered pasa_asmbl_22743.p1, internal, 41280, 41369
-recovered pasa_asmbl_22743.p1, internal, 41513, 41586
-recovered pasa_asmbl_22743.p1, internal, 42019, 42073
-recovered pasa_asmbl_22743.p1, internal, 42206, 42309
-recovered pasa_asmbl_22743.p1, internal, 42882, 42957
-recovered pasa_asmbl_22743.p1, internal, 43231, 43372
-recovered pasa_asmbl_22743.p1, internal, 43490, 43590
-recovered pasa_asmbl_22743.p1, internal, 43755, 43828
-recovered pasa_asmbl_22743.p1, internal, 44112, 44237
-recovered pasa_asmbl_22743.p1, internal, 44409, 44532
Valid prediction for HiQ_model.g30357.t1
Valid prediction for GlimmerHMM_glimmerT_45488-T1
Couldn't classify 96335, 96379
Sorry, prediction pasa_asmbl_22311.p1 fails validation.
(ATT)	 AG	96335-96379	GT	TGG
(AAA)	 AG	96793-96810	GT	TGG
(ACA)	 AG	97822-97857	GT	GGG
(TGT)	 AG	97962-98029	GT	ACG
(GTA)	 AG	98106-98148	GT	AGG
(CCT)	 AG	98366-98446	GT	AGG
(GGT)	 AG	98644-98722	GT	GGG
(AGA)	 AG	98845-98941	GT	GGG
(AAT)	 AG	99114-99198	GC	AGG
(ATT)	 AG	99372-99492	GT	CGG
(TGA)	 AG	99627-99770	GT	AGG
(AGA)	 AG	99904-99990	GT	CGG
(GTG)	 AG	100293-100379	GT	AGG
(ACT)	 AG	101385-101392	AC	AGA
-recovered pasa_asmbl_22311.p1, terminal, 101385, 101392
-recovered pasa_asmbl_22311.p1, internal, 96335, 96379
-recovered pasa_asmbl_22311.p1, internal, 96793, 96810
-recovered pasa_asmbl_22311.p1, internal, 97822, 97857
-recovered pasa_asmbl_22311.p1, internal, 97962, 98029
-recovered pasa_asmbl_22311.p1, internal, 98106, 98148
-recovered pasa_asmbl_22311.p1, internal, 98366, 98446
-recovered pasa_asmbl_22311.p1, internal, 98644, 98722
-recovered pasa_asmbl_22311.p1, internal, 98845, 98941
-recovered pasa_asmbl_22311.p1, internal, 99114, 99198
-recovered pasa_asmbl_22311.p1, internal, 99372, 99492
-recovered pasa_asmbl_22311.p1, internal, 99627, 99770
-recovered pasa_asmbl_22311.p1, internal, 99904, 99990
-recovered pasa_asmbl_22311.p1, internal, 100293, 100379
Valid prediction for GeneMark_model.79457_t
Valid prediction for GlimmerHMM_glimmerT_45486-T1
Valid prediction for snap_scaffold_19-snap.1625-T1
Couldn't classify 41702, 41767
Couldn't classify 41861, 41902
Sorry, prediction CodingQuarry_transcript_25668-T1 fails validation.
(ATG)	 CC	41079-41114	GT	AGG
(ATT)	 AG	41280-41369	GT	AGG
(CTG)	 AG	41513-41586	GT	AGG
(GTG)	 AG	41702-41767	AT	CAA
(ATC)	 AC	41861-41902	GT	TGG
(GGC)	 AG	42019-42073	GT	ATG
(GCA)	 AG	42206-42309	GT	AAG
(TCG)	 AG	42882-42957	GT	AGG
(ATC)	 AG	43231-43372	GC	AGG
(CGG)	 AG	43490-43590	GT	TGG
(GGT)	 AG	43755-43828	GT	AGG
(CGA)	 AG	44112-44237	GT	GTG
(GTA)	 AG	44409-44532	GT	TGG
(GGT)	 AG	44638-44727	CG	AGC
-recovered CodingQuarry_transcript_25668-T1, initial, 41079, 41114
add_exon() Sorry, CodingQuarry_transcript_25668-T1 41513-41586-terminal-2 is invalid.
-recovered CodingQuarry_transcript_25668-T1, terminal, 41513, 41586
-recovered CodingQuarry_transcript_25668-T1, terminal, 44638, 44727
-recovered CodingQuarry_transcript_25668-T1, internal, 41280, 41369
-recovered CodingQuarry_transcript_25668-T1, internal, 41513, 41586
-recovered CodingQuarry_transcript_25668-T1, internal, 42019, 42073
-recovered CodingQuarry_transcript_25668-T1, internal, 42206, 42309
-recovered CodingQuarry_transcript_25668-T1, internal, 42882, 42957
-recovered CodingQuarry_transcript_25668-T1, internal, 43231, 43372
-recovered CodingQuarry_transcript_25668-T1, internal, 43490, 43590
-recovered CodingQuarry_transcript_25668-T1, internal, 43755, 43828
-recovered CodingQuarry_transcript_25668-T1, internal, 44112, 44237
-recovered CodingQuarry_transcript_25668-T1, internal, 44409, 44532
Valid prediction for GlimmerHMM_glimmerT_45504-T1
Valid prediction for CodingQuarry_transcript_25681-T1
Valid prediction for snap_scaffold_19-snap.1614-T1
Valid prediction for GlimmerHMM_glimmerT_45508-T1
Valid prediction for snap_scaffold_19-snap.1611-T1
Valid prediction for snap_scaffold_19-snap.1597-T1
Couldn't classify 189026, 189031
Couldn't classify 190220, 190326
Sorry, prediction pasa_asmbl_22324.p1 fails validation.
(TAC)	 CG	189026-189031	GT	AGG
(ACC)	 AG	189117-189215	GT	AGG
(GAC)	 AG	189296-189381	GT	AGG
(TCT)	 AG	189858-189907	GT	GGG
(GCC)	 AG	189991-190059	GT	TGG
(CCC)	 AG	190220-190326	CA	CCC
-recovered pasa_asmbl_22324.p1, internal, 189117, 189215
-recovered pasa_asmbl_22324.p1, internal, 189296, 189381
-recovered pasa_asmbl_22324.p1, internal, 189858, 189907
-recovered pasa_asmbl_22324.p1, internal, 189991, 190059
Valid prediction for pasa_asmbl_22320.p1
Valid prediction for GeneMark_model.79434_t
Valid prediction for snap_scaffold_19-snap.1605-T1
Valid prediction for GeneMark_model.79449_t
Valid prediction for GeneMark_model.79435_t
Valid prediction for GlimmerHMM_glimmerT_45505-T1
Valid prediction for GeneMark_model.79428_t
Couldn't classify 68461, 68933
Couldn't classify 69083, 69161
Sorry, prediction pasa_asmbl_22304.p1 fails validation.
(TCG)	 AG	68461-68933	GT	GGG
(GAT)	 AG	69083-69161	CG	TGC
-recovered pasa_asmbl_22304.p1, internal, 68461, 68933
Valid prediction for snap_scaffold_19-snap.1627-T1
Valid prediction for snap_scaffold_19-snap.1624-T1
Valid prediction for GeneMark_model.79459_t
Valid prediction for Augustus_model.g30347.t1
Valid prediction for GlimmerHMM_glimmerT_45490-T1
Valid prediction for HiQ_model.g30344.t1
Valid prediction for GeneMark_model.79451_t
Valid prediction for GeneMark_model.79446_t
Valid prediction for CodingQuarry_transcript_25682-T1
Valid prediction for GlimmerHMM_glimmerT_45510-T1
Couldn't classify 188906, 188959
Sorry, prediction pasa_asmbl_22322.p1 fails validation.
(ATG)	 GG	185772-185779	GT	GGG
(GTT)	 AG	186132-186306	GT	AGG
(TTC)	 AG	188127-188199	GT	ACG
(ACC)	 AG	188314-188437	GT	AGG
(GCT)	 AG	188521-188719	GT	AGG
(GTA)	 AG	188906-188959	GT	ACG
-recovered pasa_asmbl_22322.p1, initial, 185772, 185779
-recovered pasa_asmbl_22322.p1, internal, 186132, 186306
-recovered pasa_asmbl_22322.p1, internal, 188127, 188199
-recovered pasa_asmbl_22322.p1, internal, 188314, 188437
-recovered pasa_asmbl_22322.p1, internal, 188521, 188719
-recovered pasa_asmbl_22322.p1, internal, 188906, 188959
Valid prediction for Augustus_model.g30352.t1
Valid prediction for GeneMark_model.79461_t
Valid prediction for GlimmerHMM_glimmerT_45509-T1
Valid prediction for GlimmerHMM_glimmerT_45515-T1
Valid prediction for HiQ_model.g30335.t1
Valid prediction for GlimmerHMM_glimmerT_45516-T1
Valid prediction for CodingQuarry_transcript_25673-T1
Valid prediction for GeneMark_model.79447_t
Valid prediction for pasa_asmbl_22318.p1
Valid prediction for GlimmerHMM_glimmerT_45494-T1
Valid prediction for GeneMark_model.79456_t
Valid prediction for snap_scaffold_19-snap.1620-T1
Valid prediction for HiQ_model.g30353.t1
Valid prediction for GeneMark_model.79439_t
Couldn't classify 23924, 24086
Sorry, prediction CodingQuarry_transcript_25667-T1 fails validation.
(ATG)	 CA	20730-20831	GT	AGG
(GCA)	 AG	22939-23110	GT	CAG
(ACC)	 AG	23336-23460	GT	AGG
(TAT)	 AG	23547-23644	GT	ACG
(ATG)	 AG	23924-24086	GG	ATG
(GGC)	 AG	25662-25685	AC	GAA
-recovered CodingQuarry_transcript_25667-T1, initial, 20730, 20831
-recovered CodingQuarry_transcript_25667-T1, terminal, 25662, 25685
-recovered CodingQuarry_transcript_25667-T1, internal, 22939, 23110
-recovered CodingQuarry_transcript_25667-T1, internal, 23336, 23460
-recovered CodingQuarry_transcript_25667-T1, internal, 23547, 23644
Valid prediction for snap_scaffold_19-snap.1626-T1
Valid prediction for GlimmerHMM_glimmerT_45517-T1
Valid prediction for CodingQuarry_transcript_25678-T1
Valid prediction for CodingQuarry_transcript_25676-T1
Valid prediction for GeneMark_model.79454_t
Valid prediction for snap_scaffold_19-snap.1622-T1
Valid prediction for Augustus_model.g30358.t1
Valid prediction for pasa_asmbl_22302.p1
Valid prediction for GlimmerHMM_glimmerT_45512-T1
Valid prediction for HiQ_model.g30355.t1
Valid prediction for CodingQuarry_transcript_25666-T1
Valid prediction for GeneMark_model.79432_t
Valid prediction for GlimmerHMM_glimmerT_45501-T1
Valid prediction for GlimmerHMM_glimmerT_45487-T1
Valid prediction for Augustus_model.g30350.t1
Valid prediction for snap_scaffold_19-snap.1610-T1
Couldn't classify 190855, 191197
Couldn't classify 191365, 191465
Sorry, prediction pasa_asmbl_22325.p1 fails validation.
(GGG)	 CA	190855-191197	GT	AGG
(GCT)	 AG	191365-191465	GG	GCG
Valid prediction for Augustus_model.g30345.t1
Valid prediction for snap_scaffold_19-snap.1607-T1
Valid prediction for GeneMark_model.79460_t
Valid prediction for GeneMark_model.79462_t
Valid prediction for HiQ_model.g30334.t1
Valid prediction for GeneMark_model.79438_t
Valid prediction for Augustus_model.g30342.t1
Valid prediction for HiQ_model.g30332.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_19-snap.1596-T1
Valid prediction for GeneMark_model.79423_t
Valid prediction for snap_scaffold_19-snap.1615-T1
Valid prediction for GlimmerHMM_glimmerT_45495-T1
Valid prediction for GlimmerHMM_glimmerT_45489-T1
Valid prediction for snap_scaffold_19-snap.1594-T1
Valid prediction for snap_scaffold_19-snap.1604-T1
Valid prediction for snap_scaffold_19-snap.1593-T1
Valid prediction for snap_scaffold_19-snap.1601-T1
Couldn't classify 103328, 103358
Sorry, prediction pasa_asmbl_21500.p1 fails validation.
(GAG)	 AG	103328-103358	GT	GAG
(TCC)	 AG	103519-103669	GT	AGG
(GTC)	 AG	103780-103854	GT	CTG
(GTG)	 AG	103957-104125	GG	AGG
-recovered pasa_asmbl_21500.p1, terminal, 103957, 104125
-recovered pasa_asmbl_21500.p1, internal, 103328, 103358
-recovered pasa_asmbl_21500.p1, internal, 103519, 103669
-recovered pasa_asmbl_21500.p1, internal, 103780, 103854
Valid prediction for snap_scaffold_19-snap.1612-T1
Valid prediction for GeneMark_model.79465_t
Valid prediction for GeneMark_model.79430_t
Valid prediction for GeneMark_model.79448_t
Valid prediction for CodingQuarry_transcript_25671-T1
Valid prediction for Augustus_model.g30356.t1
Valid prediction for GeneMark_model.79436_t
Valid prediction for GeneMark_model.79463_t
Valid prediction for GlimmerHMM_glimmerT_45511-T1
Valid prediction for GeneMark_model.79453_t
Valid prediction for Augustus_model.g30338.t1
Valid prediction for pasa_asmbl_21489.p1
Valid prediction for Augustus_model.g30331.t1
Valid prediction for GeneMark_model.79422_t
Couldn't classify 100289, 100370
Couldn't classify 100798, 100920
Sorry, prediction pasa_asmbl_21920.p1 fails validation.
(CAC)	 TC	100289-100370	GT	GGG
(GGT)	 AG	100530-100666	GT	AAG
(GTG)	 AG	100798-100920	AC	GCA
-recovered pasa_asmbl_21920.p1, internal, 100530, 100666
Valid prediction for GlimmerHMM_glimmerT_45518-T1
Valid prediction for HiQ_model.g30354.t1
Valid prediction for GeneMark_model.79427_t
Valid prediction for GeneMark_model.79429_t
Valid prediction for Augustus_model.g30343.t1
Valid prediction for HiQ_model.g30341.t1
Valid prediction for Augustus_model.g30337.t1
Valid prediction for GeneMark_model.79455_t
Valid prediction for GeneMark_model.79442_t
Valid prediction for snap_scaffold_19-snap.1623-T1
Valid prediction for Augustus_model.g30351.t1
Valid prediction for Augustus_model.g30349.t1
Couldn't classify 121600, 121632
Couldn't classify 122885, 122923
Sorry, prediction pasa_asmbl_21499.p1 fails validation.
(CCC)	 TG	121600-121632	GT	AGG
(CCT)	 AG	121757-121945	GT	AGG
(GGT)	 AG	122191-122332	GT	AGG
(AGC)	 AG	122620-122765	GT	AGG
(CAG)	 AG	122885-122923	GC	TCG
-recovered pasa_asmbl_21499.p1, internal, 121757, 121945
-recovered pasa_asmbl_21499.p1, internal, 122191, 122332
-recovered pasa_asmbl_21499.p1, internal, 122620, 122765
-recovered pasa_asmbl_21499.p1, internal, 122885, 122923
Valid prediction for GeneMark_model.79443_t
Valid prediction for CodingQuarry_transcript_25672-T1
Valid prediction for snap_scaffold_19-snap.1602-T1
Valid prediction for CodingQuarry_transcript_25669-T1
Valid prediction for GeneMark_model.79441_t
Valid prediction for Augustus_model.g30339.t1
Valid prediction for GeneMark_model.79450_t
Valid prediction for snap_scaffold_19-snap.1603-T1
Valid prediction for CodingQuarry_transcript_25670-T1
Valid prediction for GlimmerHMM_glimmerT_45507-T1
Valid prediction for GeneMark_model.79431_t
Valid prediction for GlimmerHMM_glimmerT_45491-T1
Valid prediction for snap_scaffold_19-snap.1629-T1
Valid prediction for Augustus_model.g30340.t1
Valid prediction for pasa_asmbl_21492.p1
Valid prediction for snap_scaffold_19-snap.1621-T1
Valid prediction for GeneMark_model.79426_t
Valid prediction for snap_scaffold_19-snap.1598-T1
Valid prediction for GlimmerHMM_glimmerT_45499-T1
Valid prediction for GlimmerHMM_glimmerT_45485-T1
Valid prediction for Augustus_model.g30359.t1
Valid prediction for GeneMark_model.79440_t
Valid prediction for GlimmerHMM_glimmerT_45484-T1
Valid prediction for Augustus_model.g30346.t1
Valid prediction for Augustus_model.g30333.t1
Valid prediction for snap_scaffold_19-snap.1618-T1
Valid prediction for GeneMark_model.79425_t
Valid prediction for GeneMark_model.79458_t
Valid prediction for snap_scaffold_19-snap.1606-T1
Valid prediction for GlimmerHMM_glimmerT_45502-T1
Valid prediction for snap_scaffold_19-snap.1600-T1
Valid prediction for snap_scaffold_19-snap.1619-T1
Valid prediction for snap_scaffold_19-snap.1617-T1
Valid prediction for snap_scaffold_19-snap.1613-T1
Valid prediction for GeneMark_model.79437_t
Valid prediction for pasa_asmbl_21487.p1
Valid prediction for GlimmerHMM_glimmerT_45514-T1
Valid prediction for pasa_asmbl_21502.p1
Valid prediction for snap_scaffold_19-snap.1609-T1
Valid prediction for GlimmerHMM_glimmerT_45497-T1
Valid prediction for GlimmerHMM_glimmerT_45492-T1
Valid prediction for snap_scaffold_19-snap.1628-T1
Valid prediction for CodingQuarry_transcript_25679-T1
Valid prediction for GeneMark_model.79445_t
Valid prediction for GlimmerHMM_glimmerT_45503-T1
Valid prediction for Augustus_model.g30336.t1
Valid prediction for snap_scaffold_19-snap.1599-T1
Couldn't classify 99476, 99565
Couldn't classify 99717, 99953
Sorry, prediction pasa_asmbl_21934.p1 fails validation.
(GCC)	 GA	99476-99565	GT	ATG
(TTG)	 AG	99717-99953	GT	GGG
-recovered pasa_asmbl_21934.p1, internal, 99717, 99953
Valid prediction for GlimmerHMM_glimmerT_45496-T1
Valid prediction for GeneMark_model.79452_t
Valid prediction for GlimmerHMM_glimmerT_45493-T1
Valid prediction for pasa_asmbl_21494.p1
Valid prediction for GeneMark_model.79464_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 44727, rend_intergenic: 42132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116720, rend_intergenic: 111437  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132251, rend_intergenic: 117833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145693, rend_intergenic: 132531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162031, rend_intergenic: 156478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165465, rend_intergenic: 164003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167918, rend_intergenic: 165496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191978, rend_intergenic: 186099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 209322
-exon list size: 773


building trellis

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14.8    
15.0    
15.1    
15.2    
15.4    
15.5    
15.6    
15.7    
15.9    
16.0    
16.1    
16.3    
16.4    
16.5    
16.6    
16.8    
16.9    
17.0    
17.2    
17.3    
17.4    
17.5    
17.7    
17.8    
17.9    
18.1    
18.2    
18.3    
18.5    
18.6    
18.7    
18.8    
19.0    
19.1    
19.2    
19.4    
19.5    
19.6    
19.7    
19.9    
20.0    
20.1    
20.3    
20.4    
20.5    
20.6    
20.8    
20.9    
21.0    
21.2    
21.3    
21.4    
21.5    
21.7    
21.8    
21.9    
22.1    
22.2    
22.3    
22.5    
22.6    
22.7    
22.8    
23.0    
23.1    
23.2    
23.4    
23.5    
23.6    
23.7    
23.9    
24.0    
24.1    
24.3    
24.4    
24.5    
24.6    
24.8    
24.9    
25.0    
25.2    
25.3    
25.4    
25.5    
25.7    
25.8    
25.9    
26.1    
26.2    
26.3    
26.5    
26.6    
26.7    
26.8    
27.0    
27.1    
27.2    
27.4    
27.5    
27.6    
27.7    
27.9    
28.0    
28.1    
28.3    
28.4    
28.5    
28.6    
28.8    
28.9    
29.0    
29.2    
29.3    
29.4    
29.5    
29.7    
29.8    
29.9    
30.1    
30.2    
30.3    
30.5    
30.6    
30.7    
30.8    
31.0    
31.1    
31.2    
31.4    
31.5    
31.6    
31.7    
31.9    
32.0    
32.1    
32.3    
32.4    
32.5    
32.6    
32.8    
32.9    
33.0    
33.2    
33.3    
33.4    
33.5    
33.7    
33.8    
33.9    
34.1    
34.2    
34.3    
34.5    
34.6    
34.7    
34.8    
35.0    
35.1    
35.2    
35.4    
35.5    
35.6    
35.7    
35.9    
36.0    
36.1    
36.3    
36.4    
36.5    
36.6    
36.8    
36.9    
37.0    
37.2    
37.3    
37.4    
37.5    
37.7    
37.8    
37.9    
38.1    
38.2    
38.3    
38.5    
38.6    
38.7    
38.8    
39.0    
39.1    
39.2    
39.4    
39.5    
39.6    
39.7    
39.9    
40.0    
40.1    
40.3    
40.4    
40.5    
40.6    
40.8    
40.9    
41.0    
41.2    
41.3    
41.4    
41.5    
41.7    
41.8    
41.9    
42.1    
42.2    
42.3    
42.5    
42.6    
42.7    
42.8    
43.0    
43.1    
43.2    
43.4    
43.5    
43.6    
43.7    
43.9    
44.0    
44.1    
44.3    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.2    
45.3    
45.4    
45.5    
45.7    
45.8    
45.9    
46.1    
46.2    
46.3    
46.5    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.4    
47.5    
47.6    
47.7    
47.9    
48.0    
48.1    
48.3    
48.4    
48.5    
48.6    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.5    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.4    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.7    
53.8    
53.9    
54.1    
54.2    
54.3    
54.5    
54.6    
54.7    
54.8    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.7    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.2    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.4    
59.5    
59.6    
59.7    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.2    
61.3    
61.4    
61.5    
61.7    
61.8    
61.9    
62.1    
62.2    
62.3    
62.5    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.3    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.2    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.4    
67.5    
67.6    
67.7    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.6    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.5    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.5    
70.6    
70.7    
70.8    
71.0    
71.1    
71.2    
71.4    
71.5    
71.6    
71.7    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.8    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.7    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.2    
77.3    
77.4    
77.5    
77.7    
77.8    
77.9    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.6    
80.8    
80.9    
81.0    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.5    
82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.4    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 44727, rend_intergenic: 42132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116720, rend_intergenic: 111437  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132251, rend_intergenic: 117833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145693, rend_intergenic: 132531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162031, rend_intergenic: 156478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165465, rend_intergenic: 164003  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167918, rend_intergenic: 165496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191978, rend_intergenic: 186099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 36 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15097
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 2174 - 15097
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support