-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_19/scaffold_19_6950334-7196255

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_45345-T1
Valid prediction for snap_scaffold_19-snap.1433-T1
Valid prediction for GlimmerHMM_glimmerT_45340-T1
Valid prediction for GlimmerHMM_glimmerT_45350-T1
Valid prediction for snap_scaffold_19-snap.1432-T1
Valid prediction for snap_scaffold_19-snap.1427-T1
Valid prediction for GeneMark_model.79258_t
Valid prediction for GlimmerHMM_glimmerT_45341-T1
Valid prediction for GlimmerHMM_glimmerT_45348-T1
Valid prediction for snap_scaffold_19-snap.1426-T1
Valid prediction for GeneMark_model.79261_t
Valid prediction for GlimmerHMM_glimmerT_45355-T1
Couldn't classify 160677, 160976
Sorry, prediction pasa_asmbl_22251.p1 fails validation.
(GCA)	 TT	160677-160976	GA	CAG
Valid prediction for snap_scaffold_19-snap.1421-T1
Valid prediction for GeneMark_model.79257_t
Valid prediction for snap_scaffold_19-snap.1415-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_19-snap.1425-T1
Valid prediction for snap_scaffold_19-snap.1429-T1
Valid prediction for GeneMark_model.79268_t
Valid prediction for GeneMark_model.79270_t
Valid prediction for snap_scaffold_19-snap.1431-T1
Valid prediction for GlimmerHMM_glimmerT_45357-T1
Valid prediction for snap_scaffold_19-snap.1428-T1
Valid prediction for GlimmerHMM_glimmerT_45359-T1
Valid prediction for Augustus_model.g30240.t1
Valid prediction for Augustus_model.g30239.t1
Couldn't classify 164613, 164670
Sorry, prediction pasa_asmbl_22253.p1 fails validation.
(GAT)	 AA	164613-164670	GT	AGG
(GGA)	 AG	166538-166726	GT	TGG
(ACC)	 AG	167484-167698	GT	AGG
(CAC)	 AG	169915-170023	GT	TGG
(GTG)	 AG	170242-172235	GT	AGG
(GGG)	 AG	173505-173607	GT	TGG
(GTA)	 AG	174792-175366	TT	AAT
-recovered pasa_asmbl_22253.p1, terminal, 174792, 175366
-recovered pasa_asmbl_22253.p1, internal, 166538, 166726
-recovered pasa_asmbl_22253.p1, internal, 167484, 167698
-recovered pasa_asmbl_22253.p1, internal, 169915, 170023
-recovered pasa_asmbl_22253.p1, internal, 170242, 172235
-recovered pasa_asmbl_22253.p1, internal, 173505, 173607
Valid prediction for GlimmerHMM_glimmerT_45353-T1
Valid prediction for GeneMark_model.79267_t
Valid prediction for snap_scaffold_19-snap.1430-T1
Valid prediction for GeneMark_model.79266_t
Valid prediction for snap_scaffold_19-snap.1416-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_45352-T1
Valid prediction for GlimmerHMM_glimmerT_45343-T1
Valid prediction for GeneMark_model.79263_t
Valid prediction for GlimmerHMM_glimmerT_45354-T1
Valid prediction for GlimmerHMM_glimmerT_45351-T1
Valid prediction for GeneMark_model.79265_t
Valid prediction for GlimmerHMM_glimmerT_45342-T1
Valid prediction for snap_scaffold_19-snap.1424-T1
Valid prediction for Augustus_model.g30237.t1
Valid prediction for GeneMark_model.79264_t
Valid prediction for GlimmerHMM_glimmerT_45347-T1
Valid prediction for GeneMark_model.79260_t
Valid prediction for GlimmerHMM_glimmerT_45349-T1
Valid prediction for GlimmerHMM_glimmerT_45360-T1
Valid prediction for snap_scaffold_19-snap.1422-T1
Valid prediction for snap_scaffold_19-snap.1418-T1
Valid prediction for GlimmerHMM_glimmerT_45358-T1
Valid prediction for GeneMark_model.79262_t
Valid prediction for snap_scaffold_19-snap.1419-T1
Valid prediction for snap_scaffold_19-snap.1423-T1
Valid prediction for GlimmerHMM_glimmerT_45344-T1
Valid prediction for GeneMark_model.79254_t
Valid prediction for GeneMark_model.79256_t
Valid prediction for GlimmerHMM_glimmerT_45356-T1
Valid prediction for GeneMark_model.79255_t
Valid prediction for GeneMark_model.79269_t
Valid prediction for GlimmerHMM_glimmerT_45346-T1
Valid prediction for snap_scaffold_19-snap.1420-T1
Valid prediction for GlimmerHMM_glimmerT_45361-T1
Valid prediction for GeneMark_model.79259_t
Valid prediction for snap_scaffold_19-snap.1417-T1
Valid prediction for Augustus_model.g30238.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 245922
-exon list size: 231


building trellis

0.4    
0.9    
1.3    
1.7    
2.1    
2.6    
3.0    
3.4    
3.9    
4.3    
4.7    
5.2    
5.6    
6.0    
6.4    
6.9    
7.3    
7.7    
8.2    
8.6    
9.0    
9.4    
9.9    
10.3    
10.7    
11.2    
11.6    
12.0    
12.4    
12.9    
13.3    
13.7    
14.2    
14.6    
15.0    
15.5    
15.9    
16.3    
16.7    
17.2    
17.6    
18.0    
18.5    
18.9    
19.3    
19.7    
20.2    
20.6    
21.0    
21.5    
21.9    
22.3    
22.7    
23.2    
23.6    
24.0    
24.5    
24.9    
25.3    
25.8    
26.2    
26.6    
27.0    
27.5    
27.9    
28.3    
28.8    
29.2    
29.6    
30.0    
30.5    
30.9    
31.3    
31.8    
32.2    
32.6    
33.0    
33.5    
33.9    
34.3    
34.8    
35.2    
35.6    
36.1    
36.5    
36.9    
37.3    
37.8    
38.2    
38.6    
39.1    
39.5    
39.9    
40.3    
40.8    
41.2    
41.6    
42.1    
42.5    
42.9    
43.3    
43.8    
44.2    
44.6    
45.1    
45.5    
45.9    
46.4    
46.8    
47.2    
47.6    
48.1    
48.5    
48.9    
49.4    
49.8    
50.2    
50.6    
51.1    
51.5    
51.9    
52.4    
52.8    
53.2    
53.6    
54.1    
54.5    
54.9    
55.4    
55.8    
56.2    
56.7    
57.1    
57.5    
57.9    
58.4    
58.8    
59.2    
59.7    
60.1    
60.5    
60.9    
61.4    
61.8    
62.2    
62.7    
63.1    
63.5    
63.9    
64.4    
64.8    
65.2    
65.7    
66.1    
66.5    
67.0    
67.4    
67.8    
68.2    
68.7    
69.1    
69.5    
70.0    
70.4    
70.8    
71.2    
71.7    
72.1    
72.5    
73.0    
73.4    
73.8    
74.2    
74.7    
75.1    
75.5    
76.0    
76.4    
76.8    
77.3    
77.7    
78.1    
78.5    
79.0    
79.4    
79.8    
80.3    
80.7    
81.1    
81.5    
82.0    
82.4    
82.8    
83.3    
83.7    
84.1    
84.5    
85.0    
85.4    
85.8    
86.3    
86.7    
87.1    
87.6    
88.0    
88.4    
88.8    
89.3    
89.7    
90.1    
90.6    
91.0    
91.4    
91.8    
92.3    
92.7    
93.1    
93.6    
94.0    
94.4    
94.8    
95.3    
95.7    
96.1    
96.6    
97.0    
97.4    
97.9    
98.3    
98.7    
99.1    
99.6    
-found 9 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11911
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10905
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 175367 - 245922
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 175367 - 203522
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 175367 - 186414

-building DP trellis

-building trellis in range 186440 - 203522
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 203526 - 245922
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 203526 - 242967
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 209556 - 242967
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 209556 - 241405
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 209556 - 221714
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 221766 - 241405
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 221766 - 240389
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 221766 - 233033